PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035971
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 444aa    MW: 49797.5 Da    PI: 6.2873
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035971genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.6e-30231290159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg +WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+++d +++++tYeg+Hnh+
  Lus10035971 231 MNDGGQWRKYGQKIAKGNPCPRAYYRCTVAnGCPVRKQVQRCQDDMSILITTYEGTHNHP 290
                  589**************************999***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-31216292IPR003657WRKY domain
SuperFamilySSF1182902.62E-27224292IPR003657WRKY domain
PROSITE profilePS5081129.459226292IPR003657WRKY domain
SMARTSM007745.5E-35231291IPR003657WRKY domain
PfamPF031061.0E-26232290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MELEDRQQED EDEDDDQNSS IELSSLQDTK NKMDDQQLCG LEMEMRRMKE ENRLLREVVE  60
KTAKDYYRLQ MKLTLLHQHN NSCTEEDPQL YLSLGEKVVV DDDEEEAVNT KLKRRAIDDD  120
DDDELGLSLK LQTTPLSHHQ IQHQQDKDNY KVVDSSSSRG MNYSGKSSTI VSNKLQRINH  180
DQPHHHTDVD LLSPTNHSIN AAHLSATTSP SSPPNRKARV SVRARCQYST MNDGGQWRKY  240
GQKIAKGNPC PRAYYRCTVA NGCPVRKQVQ RCQDDMSILI TTYEGTHNHP MPPGPTAAAT  300
SFMLLDSSAA DTSPPPSSQL NLSAGPTTAN FIFPFNQQYQ QMTQQYHQMT FNSTTSTTTP  360
AAHHYPTLNS SSMHRTTSAL ARFNIVDGEL ADNVSTAIAA DPKFKVAVAA AXXXXXXXXX  420
XXXXXXXXXX SSPPTCHYSL IKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-23218294176WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100359710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-51WRKY DNA-binding protein 9