PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035893
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 372aa    MW: 42034.8 Da    PI: 4.244
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035893genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.28.1e-17133217286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt+qe+ aL++a  ++  + +r++l+   W ev++k++e    er+ +qCk++++ ++k+ykk+k ++  +++++s t++yf++++
  Lus10035893 133 WTEQETFALLDAWGDKFLQRGRKSLRSDEWLEVADKVSEVSTiERTDTQCKNRLDTVKKKYKKEKGRMVAGSCTNS-TWVYFRKMD 217
                  *************************************887666****************************99998.********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-20132219No hitNo description
PROSITE profilePS500906.028133190IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDKNSYEALQ QGYNPLNQYG SEDDDDDEEE EELSMDDEHL GDEDARDNNQ NISNIQGASN  60
DVDNDEDEDD GFYEEADEDE DDAGVGNADI GRHPKKRKLM SLSSSYEFAP RAPPLVPIAK  120
PLLVGGRNPL TDWTEQETFA LLDAWGDKFL QRGRKSLRSD EWLEVADKVS EVSTIERTDT  180
QCKNRLDTVK KKYKKEKGRM VAGSCTNSTW VYFRKMDMLM SQQGGGKGLS CGLDSGEYVF  240
MNPKAYLNRA NGFGEMRDSP GNSESGDDDD ISDGLPPKKR WCRSRGRNEE EGSSSFHLLA  300
DSIERFSEIY EKIETSKRQQ MVELEKMRMD FHRDLEMQRR EIMERAHLDM AKIGGSGDDE  360
EQDISGESAS A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035893
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073331.11e-129trihelix transcription factor ASIL1
TrEMBLA0A067KQH91e-128A0A067KQH9_JATCU; Uncharacterized protein
STRINGLus100358930.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-66Trihelix family protein