PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035840
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 580aa    MW: 64240.3 Da    PI: 6.0826
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035840genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4202.1e-1282095781373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ecA+a++++++   ++l+ + +  +s +g+p+qRl ay++e+L ar ++s+s++y+al+++e +   s++ l+++++++e++P+lkf++++a
  Lus10035840 209 LKQLLIECAKAIAENNMGYFENLVDKARGEVSITGEPIQRLGAYLVEGLVARKQSSGSNIYRALNCREPE---SKDLLSYMQILYEICPYLKFGYMAA 303
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  ++er+HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p ++  +   l ++g+rLa + e++++++ef+ l      d++ e+L
  Lus10035840 304 NGAIAEACRNAERIHIIDFQIGQGTQWMTLLQALAARPGGAPHVRITGIDDPLNKyaRGGGLDAVGKRLAALSEKFNITVEFQGL-PVFAPDVTREML 400
                  ***************************************************999989999************************6.777899****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v++gEala+nl lqlh+++desv+++++rd +L+++ksl+Pkv ++veqe+++n++sFl+rf+e+leyy a+f+s++++l+r+ +eri +E+++l+r
  Lus10035840 401 DVRQGEALAINLPLQLHHTPDESVDVNNPRDGLLRMIKSLNPKVTTLVEQESNTNTTSFLTRFVETLEYYLAIFESIDVTLARDRKERIGLEQHCLAR 498
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  + vnvvaceg+er+erhe ++kW++r+++aGFk++pls+++++ +k+ll+ ++ + y++ e++g+++lgWk+r+L+s+SaW
  Lus10035840 499 DMVNVVACEGRERVERHEMFGKWKSRFTMAGFKQYPLSSYVNSVIKSLLKCYS-EHYTLVEKDGAMLLGWKERNLISASAW 578
                  *************************************************9998.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.234183560IPR005202Transcription factor GRAS
PfamPF035147.1E-126209578IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MDTQQLFGFG TVTGSGMSYS SPYPTVSSLP DRRLMGSLKF EIGNSPTSSF STQLDNETVS  60
SVSDSHEQPS STRSLSGFSP SGNSSAESNS YLHQRTTSLQ LFPCLTSTSH SSPDMKQALQ  120
QLETALMGPD DEDMGEPNDY HGESGKLHAQ GQESSSRAWG QDEGRDSRPR AATLMSHPRQ  180
VEADAPVEKR RKAMAEESSR LQSSQPGNLK QLLIECAKAI AENNMGYFEN LVDKARGEVS  240
ITGEPIQRLG AYLVEGLVAR KQSSGSNIYR ALNCREPESK DLLSYMQILY EICPYLKFGY  300
MAANGAIAEA CRNAERIHII DFQIGQGTQW MTLLQALAAR PGGAPHVRIT GIDDPLNKYA  360
RGGGLDAVGK RLAALSEKFN ITVEFQGLPV FAPDVTREML DVRQGEALAI NLPLQLHHTP  420
DESVDVNNPR DGLLRMIKSL NPKVTTLVEQ ESNTNTTSFL TRFVETLEYY LAIFESIDVT  480
LARDRKERIG LEQHCLARDM VNVVACEGRE RVERHEMFGK WKSRFTMAGF KQYPLSSYVN  540
SVIKSLLKCY SEHYTLVEKD GAMLLGWKER NLISASAWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5921557825378Protein SCARECROW
5b3h_A8e-6021557824377Protein SCARECROW
5b3h_D8e-6021557824377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035840
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8308810.0EU830881.1 Linum usitatissimum clone LU0018C09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007214671.10.0scarecrow-like protein 21
RefseqXP_020417510.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLM5X9Y90.0M5X9Y9_PRUPE; Uncharacterized protein
STRINGLus100358400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-173GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]