PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10035705

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 485aa MW: 52507.2 Da PI: 5.1668

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10035705	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.4e-32	273	327	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fv av++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYR+ Lus10035705 273 KPRMRWTPELHESFVAAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRM 327 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.6E-31	271	328	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-17	272	327	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.5E-24	273	328	IPR006447	Myb domain, plants
Pfam	PF00249	4.4E-8	275	326	IPR001005	SANT/Myb domain
Pfam	PF14379	7.9E-22	364	410	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MKSQSVVSVM KSESPGPFCA SLSPIHNFFG VESDGNNNST LTSDQCSSSS SRPSPFIRSD 60 SLNSSNSLRL STAAAEHEKC SGPDSPLSYG SQVSKGATFQ RSSVFCTSLY SSSSLGKQLP 120 FLPHPPPIAA PCSSHQSLSA VVASTKSPPI FSDDMMSNNS TYDDDQSDAL MKDFLNLAGD 180 ASEGSFHGGM SCANDSLAFS EHLELQFLTD ELDMSITDHG ENPRLDEIYG TPETLPEKPV 240 TGSTSDENHA SAAPPVDALS GQPSPTGAAA AHKPRMRWTP ELHESFVAAV NKLDGAEKAT 300 PKGVLKLMNV EGLTIYHVKS HLQKYRMAKY LPERKEEKKN SSSEEKQPTF SSLEFDGRRK 360 GNLQISEALR MQMEVQKQLH EQLEVQKALQ VRIEEHARYL EKMLEEQQKA GTALMSPKSL 420 NVPSQESQPT SVESDSKADS ASTSSPSPST GGEVGDGNKR ECKKRIRLEE EEEKRDVEVG 480 NVVV*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MKSQSVVSVM KSESPGPFCA SLSPIHNFFG VESDGNNNST LTSDQCSSSS SRPSPFIRSD  60
SLNSSNSLRL STAAAEHEKC SGPDSPLSYG SQVSKGATFQ RSSVFCTSLY SSSSLGKQLP  120
FLPHPPPIAA PCSSHQSLSA VVASTKSPPI FSDDMMSNNS TYDDDQSDAL MKDFLNLAGD  180
ASEGSFHGGM SCANDSLAFS EHLELQFLTD ELDMSITDHG ENPRLDEIYG TPETLPEKPV  240
TGSTSDENHA SAAPPVDALS GQPSPTGAAA AHKPRMRWTP ELHESFVAAV NKLDGAEKAT  300
PKGVLKLMNV EGLTIYHVKS HLQKYRMAKY LPERKEEKKN SSSEEKQPTF SSLEFDGRRK  360
GNLQISEALR MQMEVQKQLH EQLEVQKALQ VRIEEHARYL EKMLEEQQKA GTALMSPKSL  420
NVPSQESQPT SVESDSKADS ASTSSPSPST GGEVGDGNKR ECKKRIRLEE EEEKRDVEVG  480
NVVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-26	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-26	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-26	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-26	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-26	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-26	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-26	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-26	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10035705

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021681662.1	1e-164	myb family transcription factor PHL6
Refseq	XP_021681663.1	1e-164	myb family transcription factor PHL6
Refseq	XP_021681664.1	1e-164	myb family transcription factor PHL6
Refseq	XP_021681666.1	1e-164	myb family transcription factor PHL6
Swissprot	Q949U2	1e-124	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A251L6S9	1e-162	A0A251L6S9_MANES; Uncharacterized protein
STRING	Lus10035705	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13469	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-106	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10035705

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]