PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035566
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 213aa    MW: 22980.7 Da    PI: 5.0759
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035566genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.7e-145096253
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                  ykGVr +k +g+Wv+eIr+p +   + r++lg+f  +e A +a++ a+++l
  Lus10035566 50 IYKGVR-RK-NGKWVCEIRHPQN---KSRIWLGTFTCPETAGEAHDVAALAL 96
                 69***8.66.8*********943...5**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-74996IPR001471AP2/ERF domain
CDDcd000187.30E-2249108No hitNo description
SMARTSM003801.3E-1850112IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1450108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-2250108IPR001471AP2/ERF domain
PROSITE profilePS5103217.2850106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDYSSVDEGT IQPSSSGGSG SGQNYSSPSA SPPSKRKAGR KKFQETRHPI YKGVRRKNGK  60
WVCEIRHPQN KSRIWLGTFT CPETAGEAHD VAALALGAGT GNLNFPESAH MLPRARSDYI  120
SDIQCAAATV GTSVNGGRGD VAALLLEVET ANNSGDTMMF VDEEEIFNMP VLLDSMAEGL  180
IVTPPAMKRG WFWNEVVDDG DEHCMDLTLW TN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035566
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066513.18e-66dehydration-responsive element-binding protein 1F
SwissprotA2WZI41e-45DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z51e-45DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A067L2K32e-64A0A067L2K3_JATCU; Uncharacterized protein
STRINGLus100355661e-159(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.15e-37C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]