PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035499
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 363aa    MW: 40666.7 Da    PI: 6.5092
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035499genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.11.2e-1096123734
                  HHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeek 34 
                   rr+++NReAAr+sR+RKk ++++Le  
  Lus10035499  96 LRRLAQNREAARKSRLRKKTYVQQLESS 123
                  69***********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579593.0E-794136No hitNo description
CDDcd147082.41E-2195143No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-797123No hitNo description
PfamPF001704.8E-797128IPR004827Basic-leucine zipper domain
PROSITE patternPS00036097112IPR004827Basic-leucine zipper domain
PfamPF141441.4E-31186260IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNSSSNNNNK NSNDNYNYNH IQQRQLIPYD HMGDLDQALL LYLDDAHGHS QQQNDAVADS  60
SSNPQEQQQQ QGRISTSSPP PTLSIFPSHP MHSPTLRRLA QNREAARKSR LRKKTYVQQL  120
ESSRIKLTQF EQELHRARAQ GMFFNGGGGI IGGDQTIPVI GNISTTDAAV SDMEYGRWLE  180
EHHRLTCELR AAVQEHLPEN ELKMYVDNCL AHYDVVMNLK GMAAKADVFH LVSGMWKTPA  240
ERCFMWIGGF RPSDLIKVIV SQIEPLTEQQ ILGVCGLQQS TQEAEEALSQ GLEALNQSIT  300
ETIASDSLIN SPPTNMANYM GQMALAINKL STIEGFVRQV RVAVHNPMHL YLRNREFVPS  360
SQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035499
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8840813e-99HQ884081.1 Linum usitatissimum clone Contig950 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350993.11e-152bZIP transcription factor TGA10-like
SwissprotQ52MZ21e-139TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A4P1QV001e-149A0A4P1QV00_LUPAN; Uncharacterized protein
STRINGLus100354990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.21e-119bZIP family protein