PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035462
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family BBR-BPC
Protein Properties Length: 463aa    MW: 52145.6 Da    PI: 6.3117
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035462genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind301.62.9e-921227618301
    GAGA_bind  18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqls 115
                  ++l    ++++m ++aerda+i+ernlalsek++a+a+rd+a +qr kal er+kal+erdn+++a+ ++en++++++    +   g+k+i +     
  Lus10035462  12 NALM--KNKKIMGIVAERDAAIQERNLALSEKREALAARDEAIQQRQKALIERDKALMERDNAYAAIRYRENEMSFSS----SQRGGSKCIPHPVY-- 101
                  3333..489***************************************************************976555....45567888886555.. PP

    GAGA_bind 116 epqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvC 213
                     l+++       e+ e+   +++++ +ke++  +   +a+kp++k +k  ++++++ +  v+  s+ ++ ++e++ +d+ ln +s+Des +P+PvC
  Lus10035462 102 ---LRNDL------EHDEEVAANKQPKRSKENNAAS--LKATKPRKKGSKTGEDSPPNRQAIVAVVSEGTKFRSEWDALDMELNLISYDESMMPPPVC 188
                  ...22222......2222333333333444443333..455666666666666666666677777777799*************************** PP

    GAGA_bind 214 sCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  sCtG+++qCYkWG+GGWqS+CCtttiS +PLP+ +++r++R++grKmS+g+f+klL++Laa G+dls p+DLkd+WA+HGtn+++ti+
  Lus10035462 189 SCTGTPHQCYKWGSGGWQSSCCTTTISCHPLPQLPNKRHSRVGGRKMSSGVFTKLLSRLAAAGHDLSVPLDLKDYWARHGTNRYITIK 276
                  ***************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.4E-1111276IPR010409GAGA-binding transcriptional activator
PfamPF062175.4E-8811276IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVPQHQGKEQ ANALMKNKKI MGIVAERDAA IQERNLALSE KREALAARDE AIQQRQKALI  60
ERDKALMERD NAYAAIRYRE NEMSFSSSQR GGSKCIPHPV YLRNDLEHDE EVAANKQPKR  120
SKENNAASLK ATKPRKKGSK TGEDSPPNRQ AIVAVVSEGT KFRSEWDALD MELNLISYDE  180
SMMPPPVCSC TGTPHQCYKW GSGGWQSSCC TTTISCHPLP QLPNKRHSRV GGRKMSSGVF  240
TKLLSRLAAA GHDLSVPLDL KDYWARHGTN RYITIKLVAA DDDDQLRGKL KVAVGSIEKG  300
KEKFAMDDDG KLRTINEFFS FSSPIEVKET EEEQARNEEE EFTISSLFEV AETRNIATGE  360
GKSVMDDHCK LRTVNDYFIS SPIEVTETEE EQASIKEEEF TFTSLFQVAK TRMFDLSQEE  420
EINIYLKDLS KRCDSVGCRH HYGYNISRKE EIPETSSVVR SD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035462
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084428.11e-129protein BASIC PENTACYSTEINE4 isoform X1
SwissprotQ8S8C61e-108BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A067K5V21e-128A0A067K5V2_JATCU; Uncharacterized protein
STRINGLus100354620.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-110basic pentacysteine 4