PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10035387

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 202aa MW: 22252.1 Da PI: 10.2149

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10035387	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	13	66	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+ +AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Lus10035387 13 PRMRWTTTLHARFVHAVELLGGHARATPKSVLELMDVKDLTLAHVKSHLQMYRT 66 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.31E-15	10	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	11	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	13	66	IPR006447	Myb domain, plants
Pfam	PF00249	8.8E-8	14	65	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MSRFPGKRSM RAPRMRWTTT LHARFVHAVE LLGGHARATP KSVLELMDVK DLTLAHVKSH 60 LQMYRTVKTT DRAAATSGQS DLVDNGSSGD NSEDLMLDIH NTSSSSSRRP PPEPCSMIQQ 120 QQQQGIRAPS SALWSNSSRE AWLRGKTKDP PASLTSLEQK EMDPKCMSYE RISDGSCSSS 180 QLSGSRSPQR PNLEFTLGRP L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-16	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-16	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-16	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-16	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10035387

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023898662.1	2e-88	probable transcription factor KAN2 isoform X3
Swissprot	Q9C616	2e-70	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A067E5K1	8e-86	A0A067E5K1_CITSI; Uncharacterized protein
TrEMBL	V4SED0	8e-86	V4SED0_9ROSI; Uncharacterized protein
STRING	Lus10035387	1e-146	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	7e-67	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10035387

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]