PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035329
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 291aa    MW: 32234.4 Da    PI: 4.8804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035329genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-182574255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++GVr ++ +gr++AeIrd ++    ++r++lg+f++ e+Aa+a++aa+++++g
  Lus10035329 25 KFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSVEDAARAYDAAARSFRG 74
                 79*******.**********883....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-192582No hitNo description
SuperFamilySSF541712.16E-212583IPR016177DNA-binding domain
PfamPF008475.0E-122574IPR001471AP2/ERF domain
PROSITE profilePS5103223.1822582IPR001471AP2/ERF domain
SMARTSM003808.8E-342588IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-302582IPR001471AP2/ERF domain
PRINTSPR003671.5E-92637IPR001471AP2/ERF domain
PRINTSPR003671.5E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRQPRIPANP ATAPTNPTNK AVEMKFRGVR KRPWGRFAAE IRDPWKKTRV WLGTFDSVED  60
AARAYDAAAR SFRGADAKTN FPLPAAAGLP ASTSNGSTEA SPNTASPATA XXXXXXXXXX  120
XXXXXTPPAV AVDDCRSDCD SSSTVVDDEN SNAEEIGSSG KTMLPFDLNF PAPEVVENDD  180
VFVQTWDIKI HTLIRCLLIR DGLISSRAQT ESETANLYNS LEWYELLSKK EVSKWSPLET  240
SAAKRCEDRQ VRFSSEIGKK EVEEGIYRCY KEGFFGELEL LRCNDYAILL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1825821472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035329
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8305662e-90EU830566.1 Linum usitatissimum clone LU0025F09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020694474.15e-35ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV084e-41A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGLus100353290.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-24erf domain protein 9