PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10035093

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 361aa MW: 39614.1 Da PI: 9.3736

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10035093	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.2	9.2e-29	36	89	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++F av++LGG+ kAtPk++l+lm+vkgLt++hvkSHLQ+YR+ Lus10035093 36 PRLRWTPELHHSFRLAVHRLGGNLKATPKRVLHLMEVKGLTIAHVKSHLQMYRS 89 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-28	32	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.285	32	92	IPR017930	Myb domain
SuperFamily	SSF46689	9.85E-14	34	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-21	36	89	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-8	37	88	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MKRSSSCGRN QNNNGGGSGA GAGAGAVRQY VRSKVPRLRW TPELHHSFRL AVHRLGGNLK 60 ATPKRVLHLM EVKGLTIAHV KSHLQMYRSL RSNINEEVKD EEQTKRDDDV DHQYLQLLPS 120 STKRAKSCDD ENGGRKKKKK KKTMQQQQER KGICTSRPYV NLQNHHHHHH HNIQSGDGFR 180 CEQMQQCYSA PSSSNAKSCI NDSLPNTYFG DSSIVFPPPV KHDTATHLDS DFLKLMKMEL 240 LRAFPSKGKD PDQVAAGDNA NTRAVGCDGG RSSSCELSLS LPGIEGQNVN GGSRNSDQHQ 300 IMLMSMCSDA FSSYYYYSNN NTRFQDVSSS SSSSSSSSAS SSLSSTCSLN LDLSIALCGT 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MKRSSSCGRN QNNNGGGSGA GAGAGAVRQY VRSKVPRLRW TPELHHSFRL AVHRLGGNLK  60
ATPKRVLHLM EVKGLTIAHV KSHLQMYRSL RSNINEEVKD EEQTKRDDDV DHQYLQLLPS  120
STKRAKSCDD ENGGRKKKKK KKTMQQQQER KGICTSRPYV NLQNHHHHHH HNIQSGDGFR  180
CEQMQQCYSA PSSSNAKSCI NDSLPNTYFG DSSIVFPPPV KHDTATHLDS DFLKLMKMEL  240
LRAFPSKGKD PDQVAAGDNA NTRAVGCDGG RSSSCELSLS LPGIEGQNVN GGSRNSDQHQ  300
IMLMSMCSDA FSSYYYYSNN NTRFQDVSSS SSSSSSSSAS SSLSSTCSLN LDLSIALCGT  360
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-18	37	91	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-18	37	91	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-18	37	91	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-18	37	91	3	57	Protein PHOSPHATE STARVATION RESPONSE 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	KKKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10035093

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10035093	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	7e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10035093