PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035067
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Whirly
Protein Properties Length: 273aa    MW: 29966.3 Da    PI: 6.7543
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035067genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly203.92e-63652011137
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 
                  svyk+kaal+v +++ptf++ldsg+lk+ r+G+++++++++++erkyd+ekkq fals+tev++l+++++k+s++ffhdp++k+sn+G+vrk+l+++P
  Lus10035067  65 SVYKGKAALSVTPILPTFTKLDSGSLKVGRTGTMMMTFMPSIGERKYDYEKKQMFALSPTEVGSLLSMGPKDSSDFFHDPSMKSSNAGQVRKSLSIKP 162
                  79************************************************************************************************ PP

       Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  ++dGsG+f++lsv n+++k+n++++vP++ aefavl+++
  Lus10035067 163 HADGSGYFISLSVVNNVLKTNDRVTVPITTAEFAVLKTA 201
                  *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.105.8E-7554221IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.75E-6758221IPR009044ssDNA-binding transcriptional regulator
PfamPF085368.2E-6066200IPR013742Plant transcription factor
PfamPF134565.0E-5228265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MENETLFLMI WNCSKPSYCQ WLGCRNSLSG KPGVGSDALT SLQSPISTTA AGNDNAGDRI  60
YAPFSVYKGK AALSVTPILP TFTKLDSGSL KVGRTGTMMM TFMPSIGERK YDYEKKQMFA  120
LSPTEVGSLL SMGPKDSSDF FHDPSMKSSN AGQVRKSLSI KPHADGSGYF ISLSVVNNVL  180
KTNDRVTVPI TTAEFAVLKT ACSFALPHIM GWDRLTSQQP QQLRDRSGCV PVREAECMAV  240
LTALEWIQDM GYEKVEVETD NKWVFLLRDE ID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-915921810169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-915921810169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-915921810169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-915921810169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035067
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303313.26e-95single-stranded DNA-binding protein WHY2, mitochondrial
RefseqXP_021599713.16e-95single-stranded DNA-bindig protein WHY2, mitochondrial-like
SwissprotQ8VYF72e-90WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2C9WFY51e-93A0A2C9WFY5_MANES; Uncharacterized protein
TrEMBLA9PCM91e-93A9PCM9_POPTR; Whirly family protein
STRINGLus100350670.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.19e-93WHIRLY 2