PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035059
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 318aa    MW: 34113.6 Da    PI: 6.4293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035059genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-1163111155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+ykGV   + +grW ++I++      + r++lg+f  ++ Aa+a++ a ++++g
  Lus10035059  63 SKYKGVVPQP-NGRWGSQIYEK-----HHRVWLGTFNDEDSAARAYDVAVLRFRG 111
                  89****9888.8*********3.....5**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.2E-663111IPR001471AP2/ERF domain
CDDcd000189.90E-2463118No hitNo description
SuperFamilySSF541712.03E-1663119IPR016177DNA-binding domain
PROSITE profilePS5103220.11264119IPR001471AP2/ERF domain
SMARTSM003804.6E-2764125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-2064119IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.2E-12183266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-8187253IPR015300DNA-binding pseudobarrel domain
CDDcd100174.15E-7187217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEGISSSSTT DDSTTTTTTT TTPVVAKSPP RESLCRVGSG ASSVVLDPES EIEAAESRKL  60
PSSKYKGVVP QPNGRWGSQI YEKHHRVWLG TFNDEDSAAR AYDVAVLRFR GRDAVTNFNP  120
PPTASSSEEA AFLNAHSKAE IVDMLRKHTY DDELEQSRRQ GQKQSHHLNQ NNALGSTGSG  180
GASLEDLFEK AVTPSDVGKL NRLVIPKQQA EKHFPIQGRG GRGGGGGGGG GTVEFQGRRG  240
ESVEISVLVL EQQPELRVDE RVEPFCEGEG FESRRHCEVP KIRGGAAALH WLLQVNGVGS  300
GFGRTGSDGS VVWGQYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-111852161142DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219227GGRGGGGGG
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035059
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846076.15e-89PREDICTED: LOW QUALITY PROTEIN: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM94e-80RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLB9SEJ01e-86B9SEJ0_RICCO; DNA-binding protein RAV1, putative
STRINGLus100350590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.13e-77RAV family protein
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]