PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10035056

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 379aa MW: 41911.4 Da PI: 6.4734

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10035056	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.7	2.4e-14	169	215	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Lus10035056 169 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 215 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	3.4E-5	36	105	No hit	No description
PROSITE profile	PS50888	16.907	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.5E-12	169	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	170	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.06E-14	170	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-13	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.85E-5	179	218	No hit	No description
Gene3D	G3DSA:3.30.70.260	5.1E-4	254	305	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MIMCGLKEDD INNNNTNNLQ QRHHQGGGGG DHCTFQSYNN SQNEAFHQMQ HHHHYHHQPT 60 TSFSDFTTPP PPWGHHHQYP LHDQFLVPPP LPPPTSSYGG GGGRFFNRGM QFAYDSSSAH 120 ADHLRIISET LGPVIHPGAG GGVPFGLQAE LGKMTAQEIM DAKALAASKS HSEAERRRRE 180 RINNHLAKLR SLLPSTTKTD KASLLAEVIQ HVKELKRQTN LIAETTPIPT ESDELTVDAT 240 NSVDEDGKFV IKASLCCEDR SDLLPDLIRT LKSLRLRTLK AEITTLGGRV KNVLFITADQ 300 HDDDDDENED QHDQEQPVQY SISSIHEALK AVMEKGGGGG GDESSSSGSV KRQRTNTSNN 360 VNMMEQQQQL LQQHHMSL*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MIMCGLKEDD INNNNTNNLQ QRHHQGGGGG DHCTFQSYNN SQNEAFHQMQ HHHHYHHQPT  60
TSFSDFTTPP PPWGHHHQYP LHDQFLVPPP LPPPTSSYGG GGGRFFNRGM QFAYDSSSAH  120
ADHLRIISET LGPVIHPGAG GGVPFGLQAE LGKMTAQEIM DAKALAASKS HSEAERRRRE  180
RINNHLAKLR SLLPSTTKTD KASLLAEVIQ HVKELKRQTN LIAETTPIPT ESDELTVDAT  240
NSVDEDGKFV IKASLCCEDR SDLLPDLIRT LKSLRLRTLK AEITTLGGRV KNVLFITADQ  300
HDDDDDENED QHDQEQPVQY SISSIHEALK AVMEKGGGGG GDESSSSGSV KRQRTNTSNN  360
VNMMEQQQQL LQQHHMSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10035056

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021594.1	1e-131	PREDICTED: transcription factor bHLH30-like
Refseq	XP_011021607.1	1e-131	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-107	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1L6K4S8	1e-128	A0A1L6K4S8_POPTO; Basic helix-loop-helix family protein
STRING	Lus10035056	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	6e-82	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10035056

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]