PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10035056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 379aa MW: 41911.4 Da PI: 6.4734 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.7 | 2.4e-14 | 169 | 215 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Lus10035056 169 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 215 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81995 | 3.4E-5 | 36 | 105 | No hit | No description |
PROSITE profile | PS50888 | 16.907 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.5E-12 | 169 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 170 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.06E-14 | 170 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-13 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.85E-5 | 179 | 218 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 5.1E-4 | 254 | 305 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MIMCGLKEDD INNNNTNNLQ QRHHQGGGGG DHCTFQSYNN SQNEAFHQMQ HHHHYHHQPT 60 TSFSDFTTPP PPWGHHHQYP LHDQFLVPPP LPPPTSSYGG GGGRFFNRGM QFAYDSSSAH 120 ADHLRIISET LGPVIHPGAG GGVPFGLQAE LGKMTAQEIM DAKALAASKS HSEAERRRRE 180 RINNHLAKLR SLLPSTTKTD KASLLAEVIQ HVKELKRQTN LIAETTPIPT ESDELTVDAT 240 NSVDEDGKFV IKASLCCEDR SDLLPDLIRT LKSLRLRTLK AEITTLGGRV KNVLFITADQ 300 HDDDDDENED QHDQEQPVQY SISSIHEALK AVMEKGGGGG GDESSSSGSV KRQRTNTSNN 360 VNMMEQQQQL LQQHHMSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 179 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10035056 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021594.1 | 1e-131 | PREDICTED: transcription factor bHLH30-like | ||||
Refseq | XP_011021607.1 | 1e-131 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 1e-107 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A1L6K4S8 | 1e-128 | A0A1L6K4S8_POPTO; Basic helix-loop-helix family protein | ||||
STRING | Lus10035056 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4589 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 6e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10035056 |
Publications ? help Back to Top | |||
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