PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10035055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TCP | ||||||||
Protein Properties | Length: 297aa MW: 33640 Da PI: 8.2718 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 139.4 | 2.9e-43 | 104 | 237 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssgkaaksaaksk 98 gkkdrhski+T++g RdRR+Rls+++a+rfFdLqd+LGfdk+sktieWL++++k ai++l + ++ s s c++ s ++ + +s +++ +++++ + Lus10035055 104 GKKDRHSKIYTAKGARDRRMRLSLPVARRFFDLQDMLGFDKASKTIEWLFTMSKSAIQDLQIDvcTTCSTSTCSEISTEVVVMSS-AKSTNRNKKDKM 200 89***********************************************************999755555667444444444422.223344444455 PP TCP 99 ksqksaasalnlakesrakarararertrekmriknk 135 +s +++++ ++ke+r karararert+ek+++k+k Lus10035055 201 ESCIPSTKHCPISKETRDKARARARERTTEKKNKKKK 237 55555666789*********************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-38 | 104 | 234 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.333 | 105 | 163 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.843 | 214 | 231 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MFIPNLPTDT LNPNQPPTAT SSASLTSLVN EDHYYHFSPN PFLSYAPNHD FLDDLSPIIL 60 DHDQDHPLPP PPQIPEEEEE EEEMKKNKRS EGKVIRKRST SRGGKKDRHS KIYTAKGARD 120 RRMRLSLPVA RRFFDLQDML GFDKASKTIE WLFTMSKSAI QDLQIDVCTT CSTSTCSEIS 180 TEVVVMSSAK STNRNKKDKM ESCIPSTKHC PISKETRDKA RARARERTTE KKNKKKKMLE 240 ESNYYYDEEQ CPPCSISLKN PISTALPSSS SSLGLDSGGS ELFMIMGSQY WQQVFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-13 | 110 | 163 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-13 | 110 | 163 | 1 | 54 | Putative transcription factor PCF6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10035055 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10035055 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-25 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Lus10035055 |