PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035018
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 336aa    MW: 37029.7 Da    PI: 4.2898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035018genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.6e-14109155454
          AP2   4 kGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                   GVr++k +g+W+AeIr p     +   r +lg+f t eeAa+a++  ++++ 
  Lus10035018 109 VGVRQRK-WGKWAAEIRNP-----HtkSRQWLGTFSTLEEAAQAYEDKKREYD 155
                  6*****9.**********7.....3359******************9999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.122107168IPR001471AP2/ERF domain
PRINTSPR003671.4E-6108119IPR001471AP2/ERF domain
PfamPF008473.1E-9109155IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-14109154IPR016177DNA-binding domain
SMARTSM003805.1E-16109176IPR001471AP2/ERF domain
CDDcd000182.35E-20109163No hitNo description
Gene3DG3DSA:3.30.730.101.6E-19110154IPR001471AP2/ERF domain
PRINTSPR003671.4E-6130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MKRILPSEDS LMGSKVRKVR VIYQDPYATD TDSSDDESKH SIQALKKPRR FVREISLPAV  60
SGAVSPSNTG EQQESSSQDS NNSVKNPVRK RRACAATGSV SKTGPKMPVG VRQRKWGKWA  120
AEIRNPHTKS RQWLGTFSTL EEAAQAYEDK KREYDAALAM EGSQKNESSP TTSKNQPFSG  180
STTDNDSESV LSHTSPASVL ELDTSVVSNS NNEDLNKKDD GFGLLEEEGL QAIGIVADLE  240
IPDLSFIDEA FVSSSCPPVN EDLDLGLDFT NVIDEFGRMY EDYCGIDTDQ LDLLGFEGDM  300
IPTELPDFDF DFSNEEFAYL DDHHQQPQPL NIACP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450LKKPRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531632.11e-103ethylene-responsive transcription factor ERF119
TrEMBLA0A1L6CAY11e-105A0A1L6CAY1_9ROSI; AP2/ERF domain-containing transcription factor
STRINGLus100350180.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.22e-40ERF family protein