PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034907
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 308aa    MW: 34462.6 Da    PI: 7.5526
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034907genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.4e-35211122102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+ ++F +g+k+ll+++ 
   Lus10034907  21 FVMKTYQMVNDPSTDSLISWGKANNSFIVVDPLDFSRRILPVYFKHNNFSSFVRQLNTYGFRKVDPDN---------WEFASEWFLRGQKQLLRNVV 108
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ +
   Lus10034907 109 RRPK 112
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-5017110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3318110IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3618110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.1E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-2921110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEDNTCSHSG NDDNNNVIAP FVMKTYQMVN DPSTDSLISW GKANNSFIVV DPLDFSRRIL  60
PVYFKHNNFS SFVRQLNTYG FRKVDPDNWE FASEWFLRGQ KQLLRNVVRR PKQLCKSGSR  120
SLHSIEDLVD SNEEMAVEIG RMKQDQRALE KQIEGMSKRL EATERRPEQM MAFLYKVVDD  180
PDLLPRMMTT RRKLDHRKKR CLMALVSSEN SSSPSTSTSG MATTSAQGSI KSEEEIYMPS  240
PENGFGRVQS SSPERSPEQH GWFIGEISSG RFGDGGGGGK SYDYGGTTVE SRAAGPGYPF  300
SVFGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-261811026129Heat shock factor protein 1
5d5v_B7e-261811026129Heat shock factor protein 1
5d5v_D7e-261811026129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034907
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324418.21e-101heat stress transcription factor C-1
SwissprotQ9LV523e-82HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0N7DKH11e-100A0A0N7DKH1_9ROSI; Heat shock transcription factor C1
TrEMBLB9ILM21e-99B9ILM2_POPTR; Uncharacterized protein
STRINGLus100349070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-83heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]