PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034885
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 212aa    MW: 23152.5 Da    PI: 4.4695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034885genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-172574255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++kGVr +k +g+Wv+eIr        r r++lg+++++e+Aa+a +aa  +l+g
  Lus10034885 25 KFKGVRKRK-WGKWVSEIRLqT----SRDRIWLGSYDSPEKAARAFDAALFCLRG 74
                 79****999.**********33....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-262583IPR001471AP2/ERF domain
SMARTSM003801.5E-292588IPR001471AP2/ERF domain
PfamPF008471.1E-102574IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-192583IPR016177DNA-binding domain
PROSITE profilePS5103220.4022582IPR001471AP2/ERF domain
CDDcd000189.35E-272584No hitNo description
PRINTSPR003672.2E-82637IPR001471AP2/ERF domain
PRINTSPR003672.2E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVKQSPTRVE RRTAAAAAAA ADELKFKGVR KRKWGKWVSE IRLQTSRDRI WLGSYDSPEK  60
AARAFDAALF CLRGPTSNFN FPDNPPAHIP GAGSLSRDQI QEAAVRFANS EPNLSGWSNS  120
GSADSPCPSS DVESVQSPPP AELPLDDCFL DQLANIGSGP ATFAFDYGIF PGFDDLCNDY  180
FAQTTGMFNY EEEQTTQDQV LGGHDSFLWN F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-141882772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034885
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021653117.12e-61ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-53ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1L6CAU64e-61A0A1L6CAU6_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB504e-61A0A1L6CB50_VERFO; AP2/ERF domain-containing transcription factor
STRINGLus100348851e-155(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]