PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034652
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 274aa    MW: 29922.8 Da    PI: 5.3278
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034652genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.75.2e-382382261
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 +++ ++cprCds ntkfCyynny+lsqPr+fCk+CrryWt+GG lrnvPvGgg+rk k+s
  Lus10034652 23 HNQPVNCPRCDSVNTKFCYYNNYNLSQPRHFCKSCRRYWTNGGVLRNVPVGGGCRKPKRS 82
                 57899***************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-272381IPR003851Zinc finger, Dof-type
PfamPF027012.3E-322581IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1342781IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQDIHSIGGG ARFFAGDRRL RPHNQPVNCP RCDSVNTKFC YYNNYNLSQP RHFCKSCRRY  60
WTNGGVLRNV PVGGGCRKPK RSKPKQNPDS TSAVVSTADF TTQPPEDQLN SPDSHSSSES  120
SSLSATATEV ISVGNYSISE QNNKLIGDSS LNPSFETASF LVQGGECGMF QFQLQEMGSI  180
TSLTTSRAKE TPSFDTPLSQ GQSKDEEEWR MQGMIDPTIP DEYLTVLQSG RSSGAAGFGP  240
LDWNEAGGGG GYFDLPPSGV DHVYWSQSQW NYD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034652
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0878513e-33AB087851.1 Pisum sativum PsDof6 mRNA for DNA binding with one finger 6 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614624.13e-64dof zinc finger protein DOF5.4-like
TrEMBLA0A2C9VP187e-63A0A2C9VP18_MANES; Uncharacterized protein
STRINGLus100346520.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59983050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.11e-47OBF binding protein 4