PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034374
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 424aa    MW: 47362.4 Da    PI: 6.5755
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034374genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS326.55.3e-100334161374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfsh 95 
                  l+elLl+cA + +sg+l la+a+L+++s+las +gd+mqRlaa f+ ALa+rl+   ++++y al+ ++++     ++ +l  ++lfs+++P+l f++
  Lus10034374  33 LIELLLKCAAH-ASGNLDLADAFLSEISTLASISGDSMQRLAARFASALATRLLTnRWPGIYTALNHTRDHAPPhdVAIQLRRRSLFSQAFPYLSFTY 129
                  6799*****96.678*************************************99889********777665444236666677778************ PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppsl..RiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   +  +++l+ + +e++vH +D++ +    W++Ll+++a  ++g p+l  ++T v+s    +   le++g++L k Ae lg++f+f +l   +++dl++
  Lus10034374 130 AIIARTLLQVMTHEQAVHLVDLESGDSKLWVPLLRSFARLSNGYPHLmiKVTCVSS----NGSVLEKLGQQLVKEAEVLGLSFQFVPL-KITMQDLRP 222
                  *****************************************999965338999999....99*************************5.779****** PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsles.........erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres. 279
                   +++v +gEala  +vl+lh ll+++   ++         ++ ++L +++s+sPk + vveqea+hns+++++r++e l+yysa+fds++++++  + 
  Lus10034374 223 GMINVMSGEALAFISVLNLHVLLAKEDGDQNidpskfggrHIGDFLGMIRSMSPKALFVVEQEANHNSNRLVDRVVEGLHYYSAVFDSIDSTFGIGTs 320
                  **********************954443333344456666899**********************************************999876544 PP

         GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    eer+++E++ +g ei+n+vaceg er+erhe+++kW +r+++aGF+pv++ ++  ++ak ++ ++++ gy++ +++ s++++W+drpL++++aW+
  Lus10034374 321 eqEERTMMEEM-FGDEIENMVACEGVERVERHEKYSKWAMRMSRAGFRPVRMWYSSDEEAKQMVDTFGKVGYKIVSDRTSMMICWHDRPLYALTAWT 416
                  55888888888.************************************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.1787396IPR005202Transcription factor GRAS
PfamPF035141.8E-9733416IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MPLQKPDVTL SLTLSPSSAA APRLSSEQRG IRLIELLLKC AAHASGNLDL ADAFLSEIST  60
LASISGDSMQ RLAARFASAL ATRLLTNRWP GIYTALNHTR DHAPPHDVAI QLRRRSLFSQ  120
AFPYLSFTYA IIARTLLQVM THEQAVHLVD LESGDSKLWV PLLRSFARLS NGYPHLMIKV  180
TCVSSNGSVL EKLGQQLVKE AEVLGLSFQF VPLKITMQDL RPGMINVMSG EALAFISVLN  240
LHVLLAKEDG DQNIDPSKFG GRHIGDFLGM IRSMSPKALF VVEQEANHNS NRLVDRVVEG  300
LHYYSAVFDS IDSTFGIGTS EQEERTMMEE MFGDEIENMV ACEGVERVER HEKYSKWAMR  360
MSRAGFRPVR MWYSSDEEAK QMVDTFGKVG YKIVSDRTSM MICWHDRPLY ALTAWTCADQ  420
LID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-43164162379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034374
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690824.11e-176scarecrow-like protein 3
TrEMBLB9SIU31e-173B9SIU3_RICCO; DELLA protein SLR1, putative
STRINGLus100343740.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF158131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.19e-90scarecrow-like 3