PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10034372 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 25569.5 Da PI: 9.1936 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.8e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll ++v+++G g+W+++++ g++R++k+ ++rw +yl Lus10034372 15 KGPWTPQEDKLLTEYVNLHGEGRWSSVSKSTGLKRSGKSSRLRWVNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.7e-15 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ + +++++ +G++ W+tIa++++ gRt++++k++w+++ Lus10034372 68 RGQLTPQEEGIVIELHAVWGNK-WSTIASYLP-GRTDNEIKNYWRTH 112 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.532 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.4E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-20 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.91E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.58 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.67E-9 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MMMRGYGVDE QGWRKGPWTP QEDKLLTEYV NLHGEGRWSS VSKSTGLKRS GKSSRLRWVN 60 YLRPGLKRGQ LTPQEEGIVI ELHAVWGNKW STIASYLPGR TDNEIKNYWR THFKKRSSSS 120 SSLPRNPKRR KSSSAVTNDQ QTINIHANHS SGHDSCTIDH DQKMQLDTLL LTDGNCQKQQ 180 QSCSGHNMNE FENHQWADDH LVPAAAFGSG TIIEDSLWSC LWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-23 | 15 | 119 | 7 | 110 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 130 | KKRSSSSSSLPRNPKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10034372 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018816717.1 | 2e-72 | PREDICTED: transcription factor MYB59-like | ||||
TrEMBL | A0A2I4EBF0 | 5e-71 | A0A2I4EBF0_JUGRE; transcription factor MYB59-like | ||||
STRING | Lus10034372 | 1e-167 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 5e-59 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | Lus10034372 |