PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034358
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 337aa    MW: 37131.1 Da    PI: 6.5066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034358genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.21.1e-164392255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 r +h+e E+rRR +iN++f+ Lrel+P++    ++K +Ka+ L +++ YI+ Lq
  Lus10034358 43 RSKHSETEQRRRCKINERFQILRELIPQN----DQKRDKASLLLEVIGYIQFLQ 92
                 899*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-2039108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1840111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.9074191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.40E-164396No hitNo description
PfamPF000103.1E-144392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-134797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTKSVKSHAE EDYDADDCDS PSSRGEVVKN DGKTTDQKGN TYRSKHSETE QRRRCKINER  60
FQILRELIPQ NDQKRDKASL LLEVIGYIQF LQERLQVYEG SYHGWTQEQL LPWKNHDTSE  120
NLVDNSQILK NCSAHDGTAG LANVRRLIDS NMESSTVCKE LDHTPGVLPS VQCSMQSGSS  180
MIDAIGRAIS LPTQGLQGSV SGAANLAHQI HPEVWQSQPC ITACTKPSRG VNAQALTRGH  240
ESASISNDYS RGVLSSLAQA LESSGVDLSD TSISVNIDVG KRAKHGATGL QLSPPKDQDE  300
QQTRHLNNQV MEQTGYGSIA QEYDQHTCKR LRTEKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021673298.11e-101transcription factor BIM2-like isoform X4
TrEMBLB9SIX68e-98B9SIX6_RICCO; Transcription factor BIM1, putative
STRINGLus100343580.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-51BES1-interacting Myc-like protein 2