PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10034358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 37131.1 Da PI: 6.5066 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.2 | 1.1e-16 | 43 | 92 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR +iN++f+ Lrel+P++ ++K +Ka+ L +++ YI+ Lq Lus10034358 43 RSKHSETEQRRRCKINERFQILRELIPQN----DQKRDKASLLLEVIGYIQFLQ 92 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.8E-20 | 39 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-18 | 40 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.907 | 41 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.40E-16 | 43 | 96 | No hit | No description |
Pfam | PF00010 | 3.1E-14 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-13 | 47 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MTKSVKSHAE EDYDADDCDS PSSRGEVVKN DGKTTDQKGN TYRSKHSETE QRRRCKINER 60 FQILRELIPQ NDQKRDKASL LLEVIGYIQF LQERLQVYEG SYHGWTQEQL LPWKNHDTSE 120 NLVDNSQILK NCSAHDGTAG LANVRRLIDS NMESSTVCKE LDHTPGVLPS VQCSMQSGSS 180 MIDAIGRAIS LPTQGLQGSV SGAANLAHQI HPEVWQSQPC ITACTKPSRG VNAQALTRGH 240 ESASISNDYS RGVLSSLAQA LESSGVDLSD TSISVNIDVG KRAKHGATGL QLSPPKDQDE 300 QQTRHLNNQV MEQTGYGSIA QEYDQHTCKR LRTEKL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10034358 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021673298.1 | 1e-101 | transcription factor BIM2-like isoform X4 | ||||
TrEMBL | B9SIX6 | 8e-98 | B9SIX6_RICCO; Transcription factor BIM1, putative | ||||
STRING | Lus10034358 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1730 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69010.1 | 5e-51 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10034358 |