PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034316
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 318aa    MW: 34246.5 Da    PI: 4.1942
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034316genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.4e-1589134352
          AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52 
                   +GVr++k +g+W+AeIr  +     + +r +lg+f t eeA  a++  +++
  Lus10034316  89 PSGVRQRK-WGKWAAEIRNpF-----TkTRTWLGTFNTLEEASHAYDTKKRE 134
                  68*****9.**********66.....34*******************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.67588145IPR001471AP2/ERF domain
PfamPF008479.8E-1088132IPR001471AP2/ERF domain
PRINTSPR003679.9E-789100IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1590135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-2091140IPR001471AP2/ERF domain
CDDcd000184.61E-2191156No hitNo description
SMARTSM003802.3E-1291151IPR001471AP2/ERF domain
PRINTSPR003679.9E-7111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNTSAEGSLL GSKVRKVRVI YQDPYATDSS DDESELFSAQ AANKKPKRFV REISIPLAAA  60
VTPSSTVEQQ SSSQDSSKSG GKSSSRKWPS GVRQRKWGKW AAEIRNPFTK TRTWLGTFNT  120
LEEASHAYDT KKREFDAVAA ALASDGSEKS KNSPAVVADA SPSASKNKPL RGSVTNDNDS  180
ESAVSHTSSP ASVLELDVLS KDEGFDLINE VGLDGSDAVP SVGDLEMPDL SFIDEALGSS  240
CPVDQDLDLG LDFSNIIDEF GRMYDDFCGL DEGLDVLGVQ GDVPTELPDY DFDFGSEEFA  300
YLDDHHQQQP LNIALCP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034316
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311456.16e-93ethylene-responsive transcription factor ERF119
RefseqXP_024463363.16e-93ethylene-responsive transcription factor ERF119
TrEMBLA0A1L6CAY11e-92A0A1L6CAY1_9ROSI; AP2/ERF domain-containing transcription factor
STRINGLus100343160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-35ERF family protein