PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034296
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 480aa    MW: 53124.1 Da    PI: 6.7405
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034296genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.7e-10206247445
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                   k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Lus10034296 206 QKTNRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQDL 247
                  5889*************************9888888777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-8203269IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.393205249IPR004827Basic-leucine zipper domain
PfamPF001702.3E-7207248IPR004827Basic-leucine zipper domain
CDDcd147082.84E-22207258No hitNo description
SuperFamilySSF579592.11E-6207251No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-7207252No hitNo description
PROSITE patternPS000360210225IPR004827Basic-leucine zipper domain
PfamPF141445.0E-31287360IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MQTSSSHHHH PIPSAMFQSS EMYSSSTPLL PPSFFFRGAA EQNEEEEEEE EGRRVQTRFG  60
DIGELDHHHP PQPTFHHNHA FDLSPSSSSM FSLKSGNVVN ANIVPSSSSC LLLPSPFITS  120
IGCLDTGQQQ YMYGKGTGSF GNIDNNNNNW GDSNSGGMAA DTTDTSTDVD TTDDRHHHHQ  180
QQLGGQHGSV VVVDSIDQSN CKVDDQKTNR RLAQNREAAR KSRLRKKAYV QQLENSRLKL  240
TQLEQDLQRA RQQGNFTGDH GHSAAGNDAL AFDMDYQRWL GEHQRLINDL RSAANSPMSD  300
NKLRILVDGV MSHYAEIFRL KSIAAKADVF HILSGLWKTP AERCFMWIGG FRSSELLKLV  360
GICNLQQSSQ QAEDALSQGM EALQQSLVDS LSSTSLRPGA APGCGVNVAD YMAQMAIAMG  420
KLTTLENFLH QADLLRQQTL QQLHRILTTR QAANALLVIS DYTSRLRALS SLWLARPRN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971464.10.0PREDICTED: transcription factor HBP-1b(c38) isoform X2
SwissprotQ415581e-146HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLB9HJ060.0B9HJ06_POPTR; Uncharacterized protein
STRINGLus100342960.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-117bZIP family protein