PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034271
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 316aa    MW: 34962.3 Da    PI: 5.9118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034271genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-14108154354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Lus10034271 108 KNHSEAERRRRHRINTHLSNLRSLLPNT-----TKTDKASLLAEVIQHVKDL 154
                  78*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.799105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11108154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-13108157No hitNo description
Gene3DG3DSA:4.10.280.102.0E-14109166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-15109169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00306193229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEYYDNCTAL YGSSSGGGAA DFILPHPPPS SSWASTLPHH HPGILGHQTS LQFPYQTGSW  60
DDDHDPADHH LRIISDSPLG FPNYMNNIMR TSTTGDDILD AKALAASKNH SEAERRRRHR  120
INTHLSNLRS LLPNTTKTDK ASLLAEVIQH VKDLKRQTSH LISDDEIIPT EEDDLTVEAD  180
SVDEEGNFVI KATLCCQDRH DLLPDLIATL NSLRLRTLKA EITTLAGRVK HVLFFTAADR  240
DYYSSSSNNN SDDDDNQDNS DDQSYYQQPR IQQQYCLSSI HEALKAVMEK GGGGGGHSSS  300
GGSVKRQRTN RNNNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028789300.12e-84transcription factor bHLH30-like
RefseqXP_028789302.12e-84transcription factor bHLH30-like
SwissprotQ9S7Y13e-67BH030_ARATH; Transcription factor bHLH30
TrEMBLC0JP311e-84C0JP31_LOTJA; Putative basic helix-loop-helix protein BHLH25
STRINGLus100342710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.18e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]