PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10034271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 34962.3 Da PI: 5.9118 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.2 | 3.4e-14 | 108 | 154 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Lus10034271 108 KNHSEAERRRRHRINTHLSNLRSLLPNT-----TKTDKASLLAEVIQHVKDL 154 78*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.799 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-11 | 108 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.78E-13 | 108 | 157 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 109 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-15 | 109 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-13 | 111 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00306 | 193 | 229 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEYYDNCTAL YGSSSGGGAA DFILPHPPPS SSWASTLPHH HPGILGHQTS LQFPYQTGSW 60 DDDHDPADHH LRIISDSPLG FPNYMNNIMR TSTTGDDILD AKALAASKNH SEAERRRRHR 120 INTHLSNLRS LLPNTTKTDK ASLLAEVIQH VKDLKRQTSH LISDDEIIPT EEDDLTVEAD 180 SVDEEGNFVI KATLCCQDRH DLLPDLIATL NSLRLRTLKA EITTLAGRVK HVLFFTAADR 240 DYYSSSSNNN SDDDDNQDNS DDQSYYQQPR IQQQYCLSSI HEALKAVMEK GGGGGGHSSS 300 GGSVKRQRTN RNNNI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10034271 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028789300.1 | 2e-84 | transcription factor bHLH30-like | ||||
Refseq | XP_028789302.1 | 2e-84 | transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 3e-67 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | C0JP31 | 1e-84 | C0JP31_LOTJA; Putative basic helix-loop-helix protein BHLH25 | ||||
STRING | Lus10034271 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11441 | 28 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 8e-65 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10034271 |
Publications ? help Back to Top | |||
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