PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033938
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 331aa    MW: 35828.2 Da    PI: 4.5611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033938genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19123172255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+W+AeIrdp     r  r++lg++ taeeAa+ +++a+++l+g
  Lus10033938 123 KFRGVRQRP-WGKWAAEIRDPL----RrVRVWLGTYNTAEEAAAVYDNAALQLRG 172
                  89*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29122180IPR001471AP2/ERF domain
SMARTSM003802.5E-35123186IPR001471AP2/ERF domain
CDDcd000185.39E-30123179No hitNo description
PfamPF008471.7E-12123172IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21123181IPR016177DNA-binding domain
PROSITE profilePS5103223.499123180IPR001471AP2/ERF domain
PRINTSPR003675.2E-10124135IPR001471AP2/ERF domain
PRINTSPR003675.2E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDTVKFTKLL RRSSFSDDSK PPTTQVVRIS VTDPDATDSS SDEEGNGFLQ QRVKRFVSEI  60
TVESSSSSSL HSCSVSGGGE EYGAALGANN NRRMRKRKSG SSKANNKSSN DLSVSKSAPA  120
VRKFRGVRQR PWGKWAAEIR DPLRRVRVWL GTYNTAEEAA AVYDNAALQL RGPDALTNFS  180
APVVAATAPT ATASSDYNSG SESRNDKVGL RSPVSTLRFP SPSEEAESAS LPAAVKVKEE  240
EHDCSEISEF SSSLFSDVAA YDFKSSMRDI FDETNLAFDE GFLNADSSDD VFMDAAVEPA  300
DFGFGLSSFR TEDCFEDIGD LFWSDSLLSV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18122179462ATERF1
3gcc_A2e-18122179462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197RRMRKRK
29398MRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033938
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621824.16e-85ethylene-responsive transcription factor CRF2
TrEMBLA0A1L6CAY56e-84A0A1L6CAY5_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB666e-84A0A1L6CB66_VERFO; AP2/ERF domain-containing transcription factor
STRINGLus100339380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-40cytokinin response factor 2