PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Lus10033867

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 164aa MW: 17884.6 Da PI: 6.8464

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10033867	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Lus10033867 19 YECVFCKRGFTTAQALGGHMNIH 41 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.7E-5	17	46	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.26E-7	17	47	No hit	No description
PROSITE profile	PS50157	12.196	19	46	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	21	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MSSSDETEAS SELGMGRSYE CVFCKRGFTT AQALGGHMNI HRKDRPAATK PKPNPTTNHN 60 NYRLNHDYGF NQMSFPLHHY PSRPAAHAFF PSPVISAGGG GGEGHHHLYV QAAPAYLDLF 120 GEDSWRSGDQ TKEKEYEFAG GGEGDGLDLE LRLGHHHGGG RQY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10033867

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302060.1	8e-28	protein LATE FLOWERING
TrEMBL	B9GS39	2e-26	B9GS39_POPTR; Uncharacterized protein
STRING	Lus10033867	1e-118	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1686	30	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	2e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Lus10033867