PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033642
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 411aa    MW: 45032.7 Da    PI: 6.9918
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033642genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53.1e-28149203156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR++
  Lus10033642 149 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNVASHLQKYRSH 203
                  5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.055146205IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-27147206IPR009057Homeodomain-like
SuperFamilySSF466891.74E-18147206IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26149203IPR006447Myb domain, plants
PfamPF002494.3E-8152201IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLAVSSSVDH EIFQGKAIDN AGEDEVGSFM PDFDHELLLE SIDFDELFVG FNDVVVDGST  60
AGDVLLPDLE MVEFSGGTAD VSDESEVVQN CMMMTTAKEG ETGSTVESPS SSSVVLNPEK  120
GKTKSSARET SSGSTHRNGS SKNAHGKRKV KVDWTPELHR RFVQAVEQLG VDKAVPSRIL  180
ELMGIDCLTR HNVASHLQKY RSHRKHILAR EAEAASWSQR RQVYTGKRNI HRHRHQHQPS  240
WHAPTMGFPP PAPAAVTPSP PPPPMHPHAH HLARPLHVWG HPPSIDGPVQ SHHPMHIWPP  300
NKHHPPPPAD PNSFWHHHHQ RRFTTPPVPG IPQQPSHPPQ PGRSHLLDHQ PSKESIDAAI  360
GDVLSKPWLP LPLGPPLQAL NPPAVDSVVV ELQRHGIPNI PPPAPLAPVI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15146207263ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033642
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433609.11e-103PREDICTED: transcription activator GLK1-like isoform X2
TrEMBLA0A0L9V6871e-99A0A0L9V687_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SBB91e-99A0A0S3SBB9_PHAAN; Uncharacterized protein
STRINGLus100336420.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-55GBF's pro-rich region-interacting factor 1