PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10033592 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 281aa MW: 30700.9 Da PI: 10.3707 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.7e-10 | 188 | 231 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ +L+el+P+ K++ +++LekA+ Y+k Lq Lus10033592 188 IAAKNRRERISERLKTLQELVPNG-----SKVDLVTMLEKAISYVKFLQ 231 5679*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.605 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.49E-11 | 181 | 235 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.7E-13 | 182 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-14 | 184 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-12 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-7 | 189 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MNSVQNSSDR RRSSVTMKTN HSRNNSATMS NNSSSSSLGS RNSTTTTSNN VDQQQHQHFL 60 FHAPDPHLHA PLDPLHHRSL IDFRGGSGSL LTFDHPSTAW ENFNGGWDGP MGNNNGANPP 120 DLSTTQEFNA VYHPTAKDDT PKRPNLGESL QPQKKQCNSS GSAATNSKPT TNKIAAKSVL 180 ESKDPQSIAA KNRRERISER LKTLQELVPN GSKVDLVTML EKAISYVKFL QLQVKVLAMD 240 EFWPAQGARA PDISQVKEAI DAILSTQRAR KSSSSNSNSR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10033592 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077828.1 | 1e-63 | putative transcription factor bHLH086 | ||||
TrEMBL | A0A067KLM1 | 3e-62 | A0A067KLM1_JATCU; Uncharacterized protein | ||||
STRING | Lus10033592 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4937 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 2e-53 | ROOT HAIR DEFECTIVE6 |
Link Out ? help Back to Top | |
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Phytozome | Lus10033592 |