PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033583
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 590aa    MW: 63976.8 Da    PI: 5.4606
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033583genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.11.8e-1382265871374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv++Ll+cAeav++++ +la+al+++   la+++  +m+++a+yf+eALa+r+++    +y    + + s    s++l +   f+e+sP+lkf+h+ta
  Lus10033583 226 LVHTLLACAEAVQQENVKLADALIKHTGLLAASQSGAMRKVATYFAEALARRIYK----IY-PQDCLDPS---YSDALEM--HFYETSPYLKFAHFTA 313
                  689****************************************************....44.22233332...4555444..5*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  NqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+g+p +R+Tg+g p+++ ++++l+++g++La+fAe++gv+fef+ +va++l+dle+e+L+
  Lus10033583 314 NQAILEAFATSSRVHVIDFGLKQGMQWPALMQALARRPGGSPAFRLTGIGLPQPNnNTDSLQQVGWKLAQFAETIGVEFEFRGFVANSLADLEPEMLD 411
                  *****************************************************9999***************************************** PP

         GRAS 196 vkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  ++p   Ea+aVn+v++lhrll++++ +++    vLk +k ++Pk+v++veqea+hn++ F++rf+eal+yys+lfdsle +  + + e++++++ +lg
  Lus10033583 412 LRPsdVEAVAVNSVFELHRLLARPGGIDK----VLKSIKAMNPKIVTMVEQEANHNGAVFVDRFTEALHYYSTLFDSLEGS--SSAAENHVMSELYLG 503
                  ***999***************99998888....*********************************************999..5779999******** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+i+nvvaceg +r+erhet  +Wr+r+e+aGF +v+l+++a+kqa++ll+ ++ +dgyrvee++gsl+lgW++rpL+++SaW+
  Lus10033583 504 RQICNVVACEGGDRVERHETSTQWRSRMESAGFDSVHLGSNAYKQASMLLALFAgGDGYRVEEKDGSLMLGWHTRPLIATSAWK 587
                  ***********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.0E-3647114IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011298.1E-3747120No hitNo description
PROSITE profilePS5098566.469200566IPR005202Transcription factor GRAS
PfamPF035146.1E-136226587IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MKRNHHQSTC SSFGGFNKES ASALMAPPPS AGKGKLWEED QDAGDMDELL AVLGYKVRSS  60
DMAEVAQKLE QLEMVMGTAQ DDGISHLGCD TVHYNPSDLS GWVDCMLSEL HNPPLDPTAG  120
SSSISSRGFS QQSTVFRDDS EYDLSAIPGV AAYPQAVSEM NIESSSSRRR KRMKSSSGSS  180
NTTNSSSSNS SAPSSSSSSS PSVALTVESL TRPVVIVDSQ EAGVRLVHTL LACAEAVQQE  240
NVKLADALIK HTGLLAASQS GAMRKVATYF AEALARRIYK IYPQDCLDPS YSDALEMHFY  300
ETSPYLKFAH FTANQAILEA FATSSRVHVI DFGLKQGMQW PALMQALARR PGGSPAFRLT  360
GIGLPQPNNN TDSLQQVGWK LAQFAETIGV EFEFRGFVAN SLADLEPEML DLRPSDVEAV  420
AVNSVFELHR LLARPGGIDK VLKSIKAMNP KIVTMVEQEA NHNGAVFVDR FTEALHYYST  480
LFDSLEGSSS AAENHVMSEL YLGRQICNVV ACEGGDRVER HETSTQWRSR MESAGFDSVH  540
LGSNAYKQAS MLLALFAGGD GYRVEEKDGS LMLGWHTRPL IATSAWKLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-7023358626378Protein SCARECROW
5b3h_A8e-7023358625377Protein SCARECROW
5b3h_D8e-7023358625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033583
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021689576.10.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A1L1XVY90.0A0A1L1XVY9_HEVBR; DELLA protein RGL1
STRINGLus100335830.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein