PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033504
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 469aa    MW: 53784.6 Da    PI: 9.5586
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033504genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.54.4e-2924108187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+ +e+ aL+++r+em+ +++++ l++plWee+s++m+e gf+rs+k+Ckek+en++k++k++keg+++r++++s  +++f+qlea
  Lus10033504  24 RWPSRETVALLRIRSEMDASFKDSGLRGPLWEEISRRMSELGFSRSAKKCKEKFENIQKYHKRTKEGRSRRQNGKS--YKFFQQLEA 108
                  8*********************************************************************977776..*******85 PP
2trihelix100.51.3e-31296383187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                  rW+k+e+ +Li++r++ e +++    k+plWeevs+ mr+ g++r+pk+Ckekwen+nk++k++ke+++++ ++e+s+tcpyf+ql+a
  Lus10033504 296 RWPKEEIEVLIKVRTSCEVKYQGHGPKGPLWEEVSAEMRRLGYNRNPKRCKEKWENMNKYFKRVKESRSSKaRPEDSKTCPYFHQLDA 383
                  8*******************************************************************99977*************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00422183IPR001005SANT/Myb domain
PROSITE profilePS500907.0272281IPR017877Myb-like domain
PfamPF138373.5E-2022109No hitNo description
CDDcd122031.62E-222388No hitNo description
SMARTSM007172.4E-4293355IPR001005SANT/Myb domain
SuperFamilySSF466897.53E-5295358IPR009057Homeodomain-like
PROSITE profilePS500907.213296353IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-4296353IPR009057Homeodomain-like
CDDcd122033.23E-23296360No hitNo description
PfamPF138373.5E-22296384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEVSPAPQTG GGAAAEEYSG GRNRWPSRET VALLRIRSEM DASFKDSGLR GPLWEEISRR  60
MSELGFSRSA KKCKEKFENI QKYHKRTKEG RSRRQNGKSY KFFQQLEAID SHSHNSQLAK  120
VLAADSVNQT SGGGGGAIDA TPCSVYSPVR MHFLDSTSTS TTSTTPSKEE EESEGTRKKK  180
RKLTEFFDSL MARVIEKQES LQRKFAEAVE RFERDRMARD EVWKLKELER IKRERELLVR  240
ERETVAAKDA AVLSFLQKFT NQTVSLPLPI PVRHPEKLPV PKMQTTAAEG FVPPARWPKE  300
EIEVLIKVRT SCEVKYQGHG PKGPLWEEVS AEMRRLGYNR NPKRCKEKWE NMNKYFKRVK  360
ESRSSKARPE DSKTCPYFHQ LDALYSGKTM NPDSSSANSG GSELKPEELL MHMIRRQEEL  420
QHPESATTDD GREKLNVEEK EESDGYRNDP RAMMEQSPER DDRRVEWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033504
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4614840.0GQ461484.1 Linum usitatissimum clone LU0CT0D348 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075316.11e-169trihelix transcription factor GT-2
SwissprotQ391171e-104TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A067KGU31e-168A0A067KGU3_JATCU; Uncharacterized protein
STRINGLus100335040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-55Trihelix family protein