PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033218
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 328aa    MW: 35932.2 Da    PI: 8.0352
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033218genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.99.3e-3850109261
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  ++++l+cprC+stntkfCyynnysl+qPry+Ck+C+ryWt+GG+lrn+PvGgg+rknk+ 
  Lus10033218  50 QKAILNCPRCNSTNTKFCYYNNYSLTQPRYYCKTCKRYWTEGGSLRNIPVGGGSRKNKRP 109
                  56789****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2447102IPR003851Zinc finger, Dof-type
PfamPF027011.3E-3253108IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.62154108IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105692IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDTAQWPQEI VVKPVEEILT TPQNQKPGGG GGKVNSSSRN NNVTDQKEQQ KAILNCPRCN  60
STNTKFCYYN NYSLTQPRYY CKTCKRYWTE GGSLRNIPVG GGSRKNKRPH PPPNPSDPSS  120
SSNNYSNPSK KLPGLVSSPA STLPHPPPLN PKMIQDQEGQ LHHQDLNLAF PRSFTELISH  180
HHHHESNKNN NNNHVSAMEL LTGISSSSSG PSFMHMPPSG HVYNNNASFT GVMHDDHQEF  240
VKPSGLSFSL DDIGLGISTS NNGNSNGNSS NRPFFSFEDL KQVPPSNNNH HHHNHDSNGK  300
EDHQQQHVAD SNGYWTGMLG GGGGGSW*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00210DAPTransfer from AT1G64620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033218
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2022862e-50KT202286.1 Prunus dulcis dof zinc finger protein (dof) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P2JZL47e-72A0A2P2JZL4_RHIMU; Uncharacterized protein MANES_02G005000
STRINGLus100332180.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.13e-40Dof family protein