PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10033174

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 433aa MW: 47529.2 Da PI: 6.6613

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10033174	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.2e-10	292	350	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR++A rs +RK +i+eLe kv+ L+ae +aL ++ l+ +a+l+s++ Lus10033174 292 KRVKRILANRLSAARSKERKMRYIAELELKVQGLQAEATALSAQVTVLQRDSANLTSQN 350 899*****************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-17	288	352	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.68	290	353	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-10	292	348	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-10	292	349	No hit	No description
Pfam	PF00170	1.4E-8	292	350	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.26E-21	293	344	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MCATMRQSSP NLDPQESNKR IGLPPSHPNN SHFFADQHHQ QGGTSHLRSL SQSSMFSIDF 60 RPMEQNNAAS SQGILAPVSS RVNDGGLPPL RAAAHKRAIS DTVPLGFCDM IQSSPQLVPI 120 RGQVGGFDRL ELVKQESEVA ATDEMMMMSA YMHMDNVDPL HSSGTEDNKD LDSRASGTKT 180 NGTESSDNEA ESHVKGIKRT ADGEIGPAGR HCRSVSMDSF MGGLRLDEES MIMKLPPLGV 240 RVGQHHSPSS SSMQGNLSKF NLEFGNGEFT ELELKKIMSN DKLTELAMAD PKRVKRILAN 300 RLSAARSKER KMRYIAELEL KVQGLQAEAT ALSAQVTVLQ RDSANLTSQN NELKFRLQSI 360 EQQAQLKDAL NEALVAEVQR LRLAASEVGA DSHHHHEQQP QQLPVNHQMI QPGQANTYQQ 420 QQELNQAQNS SN*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MCATMRQSSP NLDPQESNKR IGLPPSHPNN SHFFADQHHQ QGGTSHLRSL SQSSMFSIDF  60
RPMEQNNAAS SQGILAPVSS RVNDGGLPPL RAAAHKRAIS DTVPLGFCDM IQSSPQLVPI  120
RGQVGGFDRL ELVKQESEVA ATDEMMMMSA YMHMDNVDPL HSSGTEDNKD LDSRASGTKT  180
NGTESSDNEA ESHVKGIKRT ADGEIGPAGR HCRSVSMDSF MGGLRLDEES MIMKLPPLGV  240
RVGQHHSPSS SSMQGNLSKF NLEFGNGEFT ELELKKIMSN DKLTELAMAD PKRVKRILAN  300
RLSAARSKER KMRYIAELEL KVQGLQAEAT ALSAQVTVLQ RDSANLTSQN NELKFRLQSI  360
EQQAQLKDAL NEALVAEVQR LRLAASEVGA DSHHHHEQQP QQLPVNHQMI QPGQANTYQQ  420
QQELNQAQNS SN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10033174

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021611727.1	1e-146	probable transcription factor PosF21
TrEMBL	A0A2C9VWE2	1e-145	A0A2C9VWE2_MANES; Uncharacterized protein
STRING	Lus10033174	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-89	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10033174