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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10033102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 291aa MW: 33513.9 Da PI: 4.2798 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.2e-18 | 82 | 135 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q++ Le+ Fe ++++ e++++LAk l+L+ rqV +WFqNrRa++k Lus10033102 82 KKRRLSIDQVKFLEQSFEVDNKLEPERKTQLAKDLSLQPRQVAIWFQNRRARWK 135 5668999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.2 | 7.2e-41 | 81 | 172 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls +qvk+LE+sFe ++kLeperK++la++L lqprqva+WFqnrRAR+ktkqlE+dy++L ++yd+lk++ + L ke+++L++e++ Lus10033102 81 EKKRRLSIDQVKFLEQSFEVDNKLEPERKTQLAKDLSLQPRQVAIWFQNRRARWKTKQLEQDYRTLESSYDTLKADCDCLVKENDQLKTEIN 172 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-18 | 71 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 77 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-17 | 80 | 141 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-15 | 82 | 135 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.24E-16 | 82 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-18 | 84 | 144 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 112 | 135 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 3.8E-15 | 137 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MAAANGNDTG DCITNFALLN QTPTFSGPLE PVVLTRSSSP SFFGRRSRVR FEDAVRLFQL 60 NENGDDDDEY DDLDEYFRQP EKKRRLSIDQ VKFLEQSFEV DNKLEPERKT QLAKDLSLQP 120 RQVAIWFQNR RARWKTKQLE QDYRTLESSY DTLKADCDCL VKENDQLKTE INLLTDKLQM 180 KKENVEKVMI VCEEPLQKPC AAIDWGSPDV VSCKQDDMSS ARSDLFDSDS PHGVHSSLLD 240 ESDHSQDEED NSSKSLLPES YFFPKLEDDD YSDPSANFED HSFWSTSWPY * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 137 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10033102 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU830557 | 1e-174 | EU830557.1 Linum usitatissimum clone LU0025E09 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021679221.1 | 1e-103 | homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q02283 | 5e-43 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A9PHH0 | 3e-99 | A9PHH0_POPTR; HD-ZIP family protein | ||||
STRING | Lus10033102 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-45 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10033102 |
Publications ? help Back to Top | |||
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