PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033060
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 412aa    MW: 44423.9 Da    PI: 5.5122
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033060genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS168.55.2e-521623301175
         GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                  lv+ L++cAe ++ g+l+la +l++ ++ l  +  +g  + ++a yf  AL +r++     + +++ p +       e+   ++ f+e++P+lkf+h+
  Lus10033060 162 LVHMLMTCAEYIQRGELALAGSLIQDMQGLltRVDNGCGIGKVAGYFIDALTRRIFA---PVTATVGPGS-----AYETEILYHHFYEACPYLKFAHF 251
                  689*************************99666677789*****************9...3333333332.....3455567889************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                  taNqaIlea++g+++vH++Df++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+
  Lus10033060 252 TANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDQLREIGLRLAELARSVNVR 330
                  *****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011299.7E-1839112No hitNo description
PfamPF120412.3E-3039106IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098532.502136411IPR005202Transcription factor GRAS
PfamPF035141.8E-49162330IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MVPYETTAAA PPPPNPISNH HPAVSSSSSS AISKPPEIDG LLAGAGYKVR SSDLRHVAHR  60
LERLETAMLN SPSQHLSLLA SDAVLYNPSD LSSWVDTLLT ELNQSQSFPS LPSDLSDLIS  120
NPTAIDTPWI DQIQPPSQQQ QQQPPQLTVA KGVVEEDSGI RLVHMLMTCA EYIQRGELAL  180
AGSLIQDMQG LLTRVDNGCG IGKVAGYFID ALTRRIFAPV TATVGPGSAY ETEILYHHFY  240
EACPYLKFAH FTANQAILEA FDGHDCVHVV DFNLMHGLQW PALIQALALR PGGPPLLRLT  300
GIGPPSPDGR DQLREIGLRL AELARSVNVR RSLNRPVRLP WGGGFTARRR QAVDAPGQPE  360
GSRGGELNHA APQAISIRPE FDNPEHRPDR DGTGLDPEPE PENHDSGGAG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2316932926188Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078699.11e-165DELLA protein SLR1
TrEMBLA0A067K7Y41e-163A0A067K7Y4_JATCU; GRAS35 protein
STRINGLus100330600.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-55GRAS family protein