PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10032952 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 26149.2 Da PI: 7.1929 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 35 | 89 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le++Fe++ ++ ++++ +Ak+lgL+ rqV +WFqN+Ra+++ Lus10032952 35 KSKRRFSDEQIKSLESFFESDTKLEPRKKTLIAKELGLQPRQVAIWFQNKRARWR 89 67789*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.2 | 9.2e-38 | 36 | 125 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 krr+s+eq+k+LE+ Fe+++kLep++K+ +a+eLglqprqva+WFqn+RAR+++kq+Ekdy+ Lk+ yd+l+++ e+L++e ++L + Lus10032952 36 SKRRFSDEQIKSLESFFESDTKLEPRKKTLIAKELGLQPRQVAIWFQNKRARWRSKQIEKDYKLLKADYDSLASRFESLQNERQSLLLQF 125 69**********************************************************************************998665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.72E-18 | 22 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.702 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-17 | 34 | 95 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-15 | 35 | 92 | No hit | No description |
Pfam | PF00046 | 6.2E-17 | 35 | 89 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 37 | 98 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 3.1E-13 | 91 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MSETEFRPEA PDAKSETLEP PPQAPKKRKG SSNSKSKRRF SDEQIKSLES FFESDTKLEP 60 RKKTLIAKEL GLQPRQVAIW FQNKRARWRS KQIEKDYKLL KADYDSLASR FESLQNERQS 120 LLLQFENLNA LVEKTWGGDA DICKNLEGSG QVIGSDDKTI FEPEVPQVIQ NKVYTSSQSS 180 QYDGVQLMDK FHTSTEGSLA AAQEKWCSLN SSYQFDLPYG SSQGLNFWC* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10032952 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021644168.1 | 3e-67 | homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 1e-40 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | B9RPF2 | 2e-58 | B9RPF2_RICCO; Homeobox protein, putative | ||||
STRING | Lus10032952 | 1e-168 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-37 | homeobox 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10032952 |
Publications ? help Back to Top | |||
---|---|---|---|
|