PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032873
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 470aa    MW: 52692.4 Da    PI: 9.6811
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032873genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-1627112597
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +++sd +++  lv+p +fa+++  k   + t+ l+ +s +sW+v +  + ++++ ++++GWkeF++++ L +   ++F+++g+  f   v vf
  Lus10032873  27 FLHSDFNTH--LVIPARFAKKMRTK--LPATVNLKGPSRNSWSVGVE-SSNDETLFFSSGWKEFAQDHCLHSTNLLIFRYNGDALF--DVLVF 112
                  444444444..9*******999755..889****************3.5555669*************************997666..66665 PP
2B350.24.7e-16363446186
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                  f++v+++ +v +   +++p   +++h +g   e+++++l+   g +W+v+++ r k+++  lt GW+ F+++n Lk+ D+++F+ ++
  Lus10032873 363 FITVMKTTHVKTCFYMTIPMAWMKTHmDGR--EKQEVILRV-GGGEWRVRYKLREKRDSGGLTHGWRTFAEDNSLKQFDVCLFQPSK 446
                  8999**********************6444..334777665.999********99999999**********************9544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-1921113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.47921115IPR003340B3 DNA binding domain
SMARTSM010191.4E-1024115IPR003340B3 DNA binding domain
CDDcd100172.74E-1524113No hitNo description
Gene3DG3DSA:2.40.330.101.9E-2024114IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-1326106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-18360468IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-14363446IPR003340B3 DNA binding domain
SMARTSM010194.5E-9363454IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561363469IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-16363448IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-20363468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MESGSRTSSW EEEIYWNNFQ YTHFSTFLHS DFNTHLVIPA RFAKKMRTKL PATVNLKGPS  60
RNSWSVGVES SNDETLFFSS GWKEFAQDHC LHSTNLLIFR YNGDALFDVL VFDLESSCEK  120
ASSYFARKKE TRKKMRGDTP ATTSSTGFIA PSPEQQNQTG DTKPSTCQPV ISESPKKRAR  180
TGWTKPTASR DWKSAPEKSR RRALKLASYF TARKQGTGNK IKRARAEMEN PVNHSGWKPA  240
AEESNQKVLK SASYFCVQNQ EMGGSTTATK SVSSEGFVCN DSDINKGTPP AAEKSGEDGN  300
GIHTKTPALP TCPPIICELS NKRAREELTK PVVMNNDSWK TVSEESKLKA IRAARYALKE  360
DGFITVMKTT HVKTCFYMTI PMAWMKTHMD GREKQEVILR VGGGEWRVRY KLREKRDSGG  420
LTHGWRTFAE DNSLKQFDVC LFQPSKSSYN VPGADAAADI VLDVEIFRC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180PKKRART
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032873
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100328730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-35B3 family protein