PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GATA

Protein Properties

Length: 284aa MW: 30711.8 Da PI: 5.6149

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10032839	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.3	3.4e-16	195	231	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Lus10032839 195 CTNCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 231 ***99999*********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	4.4E-9	59	94	IPR010399	Tify domain
PROSITE profile	PS51320	13.922	59	94	IPR010399	Tify domain
Pfam	PF06200	2.3E-10	63	92	IPR010399	Tify domain
PROSITE profile	PS51017	12.937	127	169	IPR010402	CCT domain
Pfam	PF06203	2.8E-16	127	169	IPR010402	CCT domain
PROSITE profile	PS50114	11.161	189	248	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.0E-14	189	242	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.23E-12	191	240	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.6E-15	194	236	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	195	222	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.8E-13	195	231	IPR000679	Zinc finger, GATA-type
CDD	cd00202	3.20E-15	195	241	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MYNQSESMDF PPHDLGGEDT TGVADSMDQH DHIVYGDAAA AADVPVDDMS PDSVYVDGGA 60 DITNQLTLTF RGQVYVFDDV TPDKVQAGLL LLGGCEINSG TNGAEDTPQS QRGTGVDYPD 120 RSTQHHRAAS LNRFRQKRKE RCFDKKVRYS VRQEVAQRMQ RSKGQFTSSK KSDGSCGLDG 180 SQDSGHDDSQ QETLCTNCGI SSKSTPMMRR GPSGPRSLCN ACGLFWANRG TLRDMSKKSQ 240 DHASVATEKK KVEGEGGKVG EGIDTHNELV GLISARPLRD TDV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10032839

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015579795.1	1e-117	GATA transcription factor 25
Swissprot	Q9LRH6	1e-73	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A2P2JT47	1e-116	A0A2P2JT47_RHIMU; GATA transcription factor 25
STRING	Lus10032839	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	5e-68	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Lus10032839

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]