PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032778
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 426aa    MW: 46515.8 Da    PI: 5.2317
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032778genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-32214268155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k r+rWtpeLHe+Fvea +qLGGse+AtPk +l+lmkv+gLt+++vkSHLQkYR+
  Lus10032778 214 KGRMRWTPELHEAFVEAANQLGGSERATPKGVLKLMKVEGLTIYNVKSHLQKYRT 268
                  56****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.521211271IPR017930Myb domain
SuperFamilySSF466895.73E-17213268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-29213270IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-23214268IPR006447Myb domain, plants
PfamPF002491.1E-8216267IPR001005SANT/Myb domain
PfamPF143798.6E-24301345IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSSSFRVLHT PPEDKYPKLL DTFQTRELMR NPIPELAVPV GGSTSTGAVD YLLSSSPISP  60
HYRGSQLTSE SSSGGGSLPT SLLAPHPEVL QSTPFPVDSE ENKSSGGWSI NPLADFLDLP  120
ENVASDKNVK KTDWQWADQW ISVNDNLDAD WNEILSEVND ATETNLKVPP PPSSTNLLPQ  180
PSVQQAQVNP QQQPALSGEL NVAATPLSSA PANKGRMRWT PELHEAFVEA ANQLGGSERA  240
TPKGVLKLMK VEGLTIYNVK SHLQKYRTAR YKPEPSEGSS EKNLGSINEM KSLDFKTSIG  300
ITEALRLQME VQKRLHEQLE IQRNLQLRIE EQGRCLQMMF EKQTKMEEEK TKLPSSSSSV  360
DDKLGPSDVE GTNTPGDKTS DSGKASSHEA DKKQKLTGGG NSKDTACVRD DTALSQSQGK  420
RPRTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-31214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-31214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-31214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-31214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-31214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-31214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-31214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-31214272260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032778
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521993.11e-123protein PHR1-LIKE 1 isoform X1
SwissprotQ8GUN52e-86PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLB9S7M41e-121B9S7M4_RICCO; DNA binding protein, putative
STRINGLus100327780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.26e-76G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]