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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032499 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 28286.6 Da PI: 7.077 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.1e-20 | 97 | 147 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ g +r++lg+f+ta eAaka+++a+ l+g Lus10032499 97 HYRGVRRRP-WGKYAAEIRDPTKKG--ARVWLGTFDTAVEAAKAYDNAAFHLRG 147 7********.**********97744..***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-32 | 96 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.171 | 97 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 97 | 156 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-13 | 97 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-37 | 97 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.01E-31 | 97 | 155 | No hit | No description |
PRINTS | PR00367 | 1.3E-10 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 121 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAFPHPEAST LDTIRQYLLA DCTASMDSYI SHLNLVKTEI QDHTTTKLSP SSSSSSSSLS 60 QRRKPSMISN ISIPRPSPPV DPTRIQPDSD PAEDDRHYRG VRRRPWGKYA AEIRDPTKKG 120 ARVWLGTFDT AVEAAKAYDN AAFHLRGSRA ILNFPLEAGR SSSSASDSGS LLGKEDLITE 180 NDSKKRKIGE IEDTDEVVKK AAKGENTNPA AQGGAEPDPV PLTPSSWKDF SDSISNSKGI 240 FSVPPLSPLS PMGYSWLMVV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-29 | 96 | 156 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032499 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU830167 | 1e-149 | EU830167.1 Linum usitatissimum clone LU0009A05 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021687038.1 | 4e-73 | ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | B9NBQ9 | 5e-65 | B9NBQ9_POPTR; ERF family protein | ||||
STRING | Lus10032499 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 4e-53 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10032499 |