PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032439 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 401aa MW: 44660.9 Da PI: 7.0668 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 73.3 | 2.7e-23 | 20 | 85 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+++ +++v l+++a +L v +rRRiYDi+NVLe+++++ +++kn+++wkg Lus10032439 20 RKQKSLGLLCTNFLNLYNRDGTEVVGLDDAAARL---GV--ERRRIYDIVNVLESVGVLCRRAKNQYTWKG 85 79********************************...**..****************************98 PP | |||||||
2 | E2F_TDP | 73.4 | 2.4e-23 | 167 | 247 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ +s+++ ++l++ ak L+ + ++k+RR+YDi+NVL++l+liek ++k+++rw+g Lus10032439 167 RKEKSLGLLTQNFVKLFLCSKAELISLDNSAKLLLGDghslsILRTKVRRLYDIANVLSSLKLIEKthtadSRKPAFRWMG 247 79***************************************98899**********************9999*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.7E-26 | 16 | 86 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.19E-16 | 19 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.0E-27 | 20 | 85 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 6.4E-20 | 21 | 85 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.4E-23 | 162 | 249 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 7.5E-28 | 167 | 247 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.2E-17 | 168 | 247 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.09E-11 | 169 | 248 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MNSGLTNETE SSSRHHSYSR KQKSLGLLCT NFLNLYNRDG TEVVGLDDAA ARLGVERRRI 60 YDIVNVLESV GVLCRRAKNQ YTWKGFAAMP ETLRGLKVQG MKENFGLSDT KNDNGAKVPS 120 GDGNEVEEDD EEEDVRDLES ITGSQNEAAA ADSGNGKSAA ASKQDNRKEK SLGLLTQNFV 180 KLFLCSKAEL ISLDNSAKLL LGDGHSLSIL RTKVRRLYDI ANVLSSLKLI EKTHTADSRK 240 PAFRWMGLNK SHESSSNAPL PDICESRKRV FGADVTNISF KRNKLDSSAH DDDKIRKSKM 300 HSDQVKVDNE VIGIEGAILS QESVHESRSY QFGPFGPAAL LRDSGTVREA NEVRDWDTLG 360 STFRPQYHNQ ALRDLFVHYM EAWQSWYTEV SEKKPIQQIS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 5e-39 | 19 | 239 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032439 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ887551 | 3e-31 | HQ887551.1 Linum usitatissimum clone GMU2AYZ01AXKAY microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002511465.1 | 1e-164 | E2F transcription factor-like E2FE | ||||
Swissprot | Q8LSZ4 | 1e-123 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | B9R8Z0 | 1e-163 | B9R8Z0_RICCO; E2F, putative | ||||
STRING | Lus10032439 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3668 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-125 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10032439 |
Publications ? help Back to Top | |||
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