PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032315
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 801aa    MW: 91487.9 Da    PI: 8.4999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032315genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52e-124655411397
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +++++l k f ++h  +  e++++ lede+g+  + ++ +rk++    l++GWk F+ +++L +gD +v++l++ ++f  ++ ++
  Lus10032315 465 RNQMRLEKGFGAKHLPD--EDTMIDLEDEDGNILSARYLVRKQG----LSGGWKAFATDHKLVAGDALVLQLVEPTKF--KIYIV 541
                  567***********533..6679***************666666....***********************9876776..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.103.3E-636169IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520476.87E-536153No hitNo description
SuperFamilySSF520476.87E-5194215No hitNo description
Gene3DG3DSA:3.80.10.103.3E-6205214IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS508639.615453544IPR003340B3 DNA binding domain
SMARTSM010194.9E-11459544IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-13464542IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-14464542IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-13465542No hitNo description
PfamPF023627.2E-10465542IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MDLFDRIVKY AASRGVQHIC LRGYYRPYIE IAISGMICSC YRSLKALELE SLRLDDTVVV  60
GLFSGLQQLE SLTLSNYKFN FNAFDSDHDG LDNLSKLKNL KLIRCHPINN CSPSILKVHA  120
AKLLYLEIRQ TWYDSTEIVT PKLQSLRIEF RSLHLCATRL LQVKSSLDHA DIDLLYMRLL  180
FCETSSDNDS EEKLLLLKQC ISLFNVLANV QSLNLRIRPL QVCYQWLIQT CDIESRLVDL  240
RTYHINSFVI FSEDLVRKIS NLRLRSDRNG LLALVCHRRP PPPVCHSLPP NHCFEKFHQS  300
FPPPPNSKLL TAKKALYESK AWSFSLPLFC FCRRISKKGG RHVTNGEEQR CFLLPKAAVY  360
YLYPKKSFLG VWPFGRMWGK AIFDLIILTL GSFVTIDLKG SGSPIITSCP LPFVQIHNVR  420
QSPRLLQTGS IKQELDSGDA TPNIIGKEKD DLSTDTDMLV SPLLRNQMRL EKGFGAKHLP  480
DEDTMIDLED EDGNILSARY LVRKQGLSGG WKAFATDHKL VAGDALVLQL VEPTKFKIYI  540
VRGRSSDKMD VDSGLLQMDS DKKKLKSGLW FLVHAENLSK GYKRSNLGTN HLLTNNNSER  600
HESNDGPEGS FRFSISDGIR MCESTTIDFK QVKSFDDFDI VVNGLVINCE LSRHLQLKYY  660
QLCNSQKLFL HQHLLSGLNC KLIVGVIAET ISIADEIRAS DFTQQKKDEF ATWENTLVAF  720
EKLGMNVEFI LARLRQLMGL CDDANRRKRL RTERIRVEEE VKVLKAKLEE SVERIKRIDG  780
EMEVDHEVKF RELAKAPWSL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100323150.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-17B3 family protein