PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 514aa MW: 57212.8 Da PI: 7.3767 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl Lus10032298 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T++E++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ Lus10032298 67 RGRFTPDEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.264 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.122 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.56E-11 | 69 | 111 | No hit | No description |
Pfam | PF03501 | 2.3E-42 | 338 | 429 | IPR005326 | Plectin/S10, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPDEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPP 120 PPYPSPPSLS SSSPLLLQST PPPPPCTGVS GATHHQLVTI TSYPTSTHVL DPSHQPEPGP 180 RGTHLFPSAV QDAVFHPPPP LPSIFIFDGD HHHHHHQNQL FIEPISGSWN DHNFHHHNHN 240 HNHPPPPQSH QPFGFLPPLF EHDGDHMVGS MEDVDQEGTA GARTVMMNDE EWAAAVDSRH 300 EPSSGNNSFL FWEENDVVVD EGGIIRCGGD SNFTAAIISE KNRREISKYL FQEGVCYAKK 360 DFNLAKHPDI DVPNLQVIKL MQSFKSKEYV GETFAWMHYY WYLTNEGIEF LRAYLNLPSE 420 IVPATLKKQA KAGGRPQFGG DRPRGPPRSD GERRFGGDRE GYRSGPRAPG GEYGDKGGAP 480 ADYRPTYGGP RAGFGRGGGS YSGGAAATSS DLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4v7e_BK | 7e-61 | 337 | 487 | 2 | 156 | 40S ribosomal protein S10E |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032298 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022158473.1 | 1e-171 | transcription factor MYB39-like | ||||
TrEMBL | A0A4D6LRY4 | 1e-161 | A0A4D6LRY4_VIGUN; Myb proto-oncogene protein | ||||
STRING | Lus10032298 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 1e-83 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Lus10032298 |