PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 631aa MW: 70290 Da PI: 4.9533 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.5 | 7.4e-06 | 416 | 456 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+ R+ + ++f L++++P+ + K++ ++iL +++eY+++L+ Lus10032267 416 RKQRELLDQKFMILKSIVPSvN------KVDEVSILDETIEYLQELE 456 677888999***********55......****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.2E-51 | 8 | 185 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 11.547 | 406 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-11 | 410 | 472 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-11 | 411 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.53E-7 | 411 | 460 | No hit | No description |
SMART | SM00353 | 2.6E-7 | 412 | 461 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14688 | 0.00242 | 450 | 485 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MASGNINKQL ALAVRNIQWS YAIFWSISAE QPGVLSWGDG YYNGDIKTRK TVQTMEVETD 60 SQFGLQRSEQ LRELYQSLSS GEANPQSRRP SAALSPEDLT DTEWYYLVCM SFMFNVGHGL 120 PGRSLANSQQ IWLCNAHSAD CKVFTRSLLA KTVVCFPILG GVLEIGSTEN VSENYSLIQQ 180 IRSLFLDNPD PLTSENWNTK QDEELEKIVM EARLVPGVEC EELEMDVSPY CSSNNEGAED 240 SFIVEGIVCE DDAAAEASQV ESWLVMDENL SPGVNHSLNS SESISQTVAD PEKLVTFPSH 300 DSEACNCVKF AAPCLLPSDD LHYQSALSSI FKTSHPLMLG PRHGNLRQES SFVSWKKVGQ 360 RVVRCGTQQS MLKKILFDVP QNHIYFYSRA PENGSMDGVL RSEACKYGTD HISSARKQRE 420 LLDQKFMILK SIVPSVNKVD EVSILDETIE YLQELERRVE QLESRLEKTD SEVRTERRHQ 480 RSSERTSDNY GNINRNGNAR RIVGNKRAKP SEIDSTRPKI EPNVASDGSQ SVVKNVTVST 540 NMKDIIIKVQ CPLREGILLE IMDELARLGL DSHSVQSSTT NGILSLTIES KHKGLTGTAA 600 ASLGAIKREL ERVTMEKNNC HLNDVLVDGY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-19 | 19 | 185 | 24 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-19 | 19 | 185 | 24 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-19 | 19 | 185 | 24 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-19 | 19 | 185 | 24 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032267 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN997400 | 3e-32 | JN997400.1 Gossypium arboreum DEL65 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021668375.1 | 0.0 | transcription factor GLABRA 3-like isoform X1 | ||||
Refseq | XP_021668376.1 | 0.0 | transcription factor GLABRA 3-like isoform X1 | ||||
Refseq | XP_021668378.1 | 0.0 | transcription factor GLABRA 3-like isoform X1 | ||||
Refseq | XP_021668379.1 | 0.0 | transcription factor GLABRA 3-like isoform X2 | ||||
TrEMBL | A0A067JN60 | 0.0 | A0A067JN60_JATCU; Uncharacterized protein | ||||
STRING | Lus10032267 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 1e-147 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10032267 |