PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032267
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 631aa    MW: 70290 Da    PI: 4.9533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032267genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.4e-064164561055
                  HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  r+ R+ + ++f  L++++P+ +      K++ ++iL +++eY+++L+
  Lus10032267 416 RKQRELLDQKFMILKSIVPSvN------KVDEVSILDETIEYLQELE 456
                  677888999***********55......****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-518185IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.547406455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-11410472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-11411473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-7411460No hitNo description
SMARTSM003532.6E-7412461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146880.00242450485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MASGNINKQL ALAVRNIQWS YAIFWSISAE QPGVLSWGDG YYNGDIKTRK TVQTMEVETD  60
SQFGLQRSEQ LRELYQSLSS GEANPQSRRP SAALSPEDLT DTEWYYLVCM SFMFNVGHGL  120
PGRSLANSQQ IWLCNAHSAD CKVFTRSLLA KTVVCFPILG GVLEIGSTEN VSENYSLIQQ  180
IRSLFLDNPD PLTSENWNTK QDEELEKIVM EARLVPGVEC EELEMDVSPY CSSNNEGAED  240
SFIVEGIVCE DDAAAEASQV ESWLVMDENL SPGVNHSLNS SESISQTVAD PEKLVTFPSH  300
DSEACNCVKF AAPCLLPSDD LHYQSALSSI FKTSHPLMLG PRHGNLRQES SFVSWKKVGQ  360
RVVRCGTQQS MLKKILFDVP QNHIYFYSRA PENGSMDGVL RSEACKYGTD HISSARKQRE  420
LLDQKFMILK SIVPSVNKVD EVSILDETIE YLQELERRVE QLESRLEKTD SEVRTERRHQ  480
RSSERTSDNY GNINRNGNAR RIVGNKRAKP SEIDSTRPKI EPNVASDGSQ SVVKNVTVST  540
NMKDIIIKVQ CPLREGILLE IMDELARLGL DSHSVQSSTT NGILSLTIES KHKGLTGTAA  600
ASLGAIKREL ERVTMEKNNC HLNDVLVDGY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-191918524192Transcription factor MYC3
4rqw_B2e-191918524192Transcription factor MYC3
4rs9_A2e-191918524192Transcription factor MYC3
4yz6_A2e-191918524192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032267
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9974003e-32JN997400.1 Gossypium arboreum DEL65 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021668375.10.0transcription factor GLABRA 3-like isoform X1
RefseqXP_021668376.10.0transcription factor GLABRA 3-like isoform X1
RefseqXP_021668378.10.0transcription factor GLABRA 3-like isoform X1
RefseqXP_021668379.10.0transcription factor GLABRA 3-like isoform X2
TrEMBLA0A067JN600.0A0A067JN60_JATCU; Uncharacterized protein
STRINGLus100322670.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-147bHLH family protein