PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10031826 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 347aa MW: 37154.4 Da PI: 5.2392 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.2e-13 | 285 | 330 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +Av+YIk+Lq Lus10031826 285 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 330 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 279 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-16 | 281 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-13 | 283 | 334 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-14 | 284 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-13 | 285 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 285 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MEPDLQKQMN PGGGLARYQS APSSYFTSYL EKELCDELFN RPSSPETERF FARFLANTAA 60 EPAADDVLLS DQNLAPTPAP APAPVLSSGS QQSYYPSQSR PPLPDYRTAN LPPLPTTVKS 120 EVGGVGDGGG GGGGNNSNLG RHRGIGDFGA SRHQNASSSG RMSPIAEVVD TKCIVSESNR 180 QESSSFGDTN AGGGEYVTGF PWDDTPGIMS GGKGGLSEDD RTFSGLNDSS QNVEGGGNNP 240 PMLAHHLSLP KTAAEMSALE KLLHLQDSVP CKIRAKRGFA THPRSIAERV RRTRISERMR 300 KLQDLVPNMD KQTNTADMLD LAVDYIKDLQ TQVKVCMDLM LILPEV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10031826 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015571361.1 | 1e-105 | transcription factor bHLH122 isoform X1 | ||||
TrEMBL | B9RI88 | 1e-103 | B9RI88_RICCO; DNA binding protein, putative | ||||
STRING | Lus10031826 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4185 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10031826 |