PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10031826

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 347aa MW: 37154.4 Da PI: 5.2392

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10031826	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.2e-13	285	330	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +Av+YIk+Lq Lus10031826 285 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 330 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.294	279	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-16	281	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-13	283	334	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.3E-14	284	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-13	285	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	285	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MEPDLQKQMN PGGGLARYQS APSSYFTSYL EKELCDELFN RPSSPETERF FARFLANTAA 60 EPAADDVLLS DQNLAPTPAP APAPVLSSGS QQSYYPSQSR PPLPDYRTAN LPPLPTTVKS 120 EVGGVGDGGG GGGGNNSNLG RHRGIGDFGA SRHQNASSSG RMSPIAEVVD TKCIVSESNR 180 QESSSFGDTN AGGGEYVTGF PWDDTPGIMS GGKGGLSEDD RTFSGLNDSS QNVEGGGNNP 240 PMLAHHLSLP KTAAEMSALE KLLHLQDSVP CKIRAKRGFA THPRSIAERV RRTRISERMR 300 KLQDLVPNMD KQTNTADMLD LAVDYIKDLQ TQVKVCMDLM LILPEV*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MEPDLQKQMN PGGGLARYQS APSSYFTSYL EKELCDELFN RPSSPETERF FARFLANTAA  60
EPAADDVLLS DQNLAPTPAP APAPVLSSGS QQSYYPSQSR PPLPDYRTAN LPPLPTTVKS  120
EVGGVGDGGG GGGGNNSNLG RHRGIGDFGA SRHQNASSSG RMSPIAEVVD TKCIVSESNR  180
QESSSFGDTN AGGGEYVTGF PWDDTPGIMS GGKGGLSEDD RTFSGLNDSS QNVEGGGNNP  240
PMLAHHLSLP KTAAEMSALE KLLHLQDSVP CKIRAKRGFA THPRSIAERV RRTRISERMR  300
KLQDLVPNMD KQTNTADMLD LAVDYIKDLQ TQVKVCMDLM LILPEV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10031826

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015571361.1	1e-105	transcription factor bHLH122 isoform X1
TrEMBL	B9RI88	1e-103	B9RI88_RICCO; DNA binding protein, putative
STRING	Lus10031826	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4185	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10031826