PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031796
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 775aa    MW: 84551.6 Da    PI: 10.5061
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031796genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.3e-101667348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     +W t E++ll++av+++G+++W+++a ++         +t  qck+++++++
      Lus10031796 16 SWGTLEELLLACAVNRHGTKSWDSVAVEVLnrtetlSSLTSQQCKDKFNDLR 67
                     7*****************************999999999*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.3E-51369IPR001005SANT/Myb domain
SuperFamilySSF466892.89E-51672IPR009057Homeodomain-like
PfamPF002491.9E-91666IPR001005SANT/Myb domain
PROSITE profilePS500906.2951667IPR017877Myb-like domain
CDDcd001675.40E-61666No hitNo description
Gene3DG3DSA:1.10.10.606.1E-51666IPR009057Homeodomain-like
SMARTSM002979.9E-15305414IPR001487Bromodomain
SuperFamilySSF473702.09E-16311416IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.2E-14311433IPR001487Bromodomain
CDDcd043693.25E-14316407No hitNo description
PfamPF004391.8E-9318399IPR001487Bromodomain
PROSITE profilePS5001411.45324395IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MAKERDAAPT AAAALSWGTL EELLLACAVN RHGTKSWDSV AVEVLNRTET LSSLTSQQCK  60
DKFNDLRRRF LPRVHHSSAA TASGLVPMVD ELRRLRVEEL RREVQRRDLS IESLELKVKR  120
LEEERERSLK EEEEEEADLA REGRRLSAAE KSGGGYDSAD DRENGSFNES NSTSQQQKAG  180
TTTLKEEEVD IKPETDSRNG SDLGRDHSDP SGERISSYNC NLDDKRDEKC QAGEKNNELG  240
GESVGESKRE ETKEKEKQSS DVQSSVSLKK KRRRRVGSGG ATTAGVAASS SGEDPEGGDE  300
VSPARKRVAA VKSEPLVRIL EIIRSHRLGS VFERRLRSQE SERYKSLIRQ HIDLRTVQLR  360
LDKGVYLSCI PKFYRDLLLL FNNAILFFRE SSPENNAARE LRSLVLRNMK DKLRKPPPSS  420
SSSKPQPQPQ SKPPPTLQPA AATLANQNVK LEAAASQKKT STSTSKPDKS SSTLVSCGKR  480
NVSLKAAASS EKLQQTPSSV KLVNNSKQKQ RASAEEKDKE KPKVNSKTAE LASSSVRKVE  540
EKAKEDVEDD EEEEIKDVRK ARTTVTNTRE RTTGVKGRRN ARVAVTTTVT GNKNGGGGEG  600
SNKHKYGGNE LSSHDALDSK AERKEQTATV RKKRGAASFL KRMKQNSEAT NNKNDDDGSS  660
SSSLSSSSSS EKDGDKKTKE EKGKEKKGSK AVRQVSNKDM ARERPITRSS RGRGRGESGK  720
GRRGGGRGGR KGDGGGGGGR GGSAVASVEP SGKRGRDGDG DGGSGGRARK RARR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273KKKRRR
2268274KKKRRRR
3269274KKRRRR
4270275KRRRRV
5727735GGRKGDGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031796
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087433.10.0uncharacterized protein LOC105646228
TrEMBLA0A067JQL80.0A0A067JQL8_JATCU; Uncharacterized protein
STRINGLus100317960.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-22DNA-binding bromodomain-containing protein