PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10031677

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 259aa MW: 28659.5 Da PI: 9.9693

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10031677	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.9e-13	80	132	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h +Er+RR+++ ++ Lr+llP + ++K s ++ +Av+YIk+L+ Lus10031677 80 KKVLHRDIERQRRQNMSALYASLRSLLPLEF--VKGKRSMSDHMNEAVNYIKQLE 132 6788***********************65..******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.46E-14	77	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.49E-11	79	136	No hit	No description
PROSITE profile	PS50888	14.272	79	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-10	80	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-10	81	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-5	85	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MFPLHQGNEL CFQISSVDSI PQQDLILPPT TTTSTNLLHN YHLHGTPASG RRRRKNTATA 60 AMENSNGNSG AGESTTTTSK KVLHRDIERQ RRQNMSALYA SLRSLLPLEF VKGKRSMSDH 120 MNEAVNYIKQ LERRIKELEG KRNKVNVLTN GNGNGNNNAA AVLTNGSAGT KSSVEVRRCL 180 AGVEVFLTSP AEVGWRLSGV MRVMAEEELT VLNCYSTRVN RTCFHTLHAE VEDPTNFNLR 240 GLQQKLIHLL PLIMHGND*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10031677

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10031677	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	1e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10031677