PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10031677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 28659.5 Da PI: 9.9693 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.9e-13 | 80 | 132 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h +Er+RR+++ ++ Lr+llP + ++K s ++ +Av+YIk+L+ Lus10031677 80 KKVLHRDIERQRRQNMSALYASLRSLLPLEF--VKGKRSMSDHMNEAVNYIKQLE 132 6788*************************65..********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.46E-14 | 77 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.49E-11 | 79 | 136 | No hit | No description |
PROSITE profile | PS50888 | 14.272 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-10 | 80 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 81 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-5 | 85 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MFPLHQGNEL CFQISSVDSI PQQDLILPPT TTTSTNLLHN YHLHGTPASG RRRRKNTATA 60 AMENSNGNSG AGESTTTTSK KVLHRDIERQ RRQNMSALYA SLRSLLPLEF VKGKRSMSDH 120 MNEAVNYIKQ LERRIKELEG KRNKVNVLTN GNGNGNNNAA AVLTNGSAGT KSSVEVRRCL 180 AGVEVFLTSP AEVGWRLSGV MRVMAEEELT VLNCYSTRVN RTCFHTLHAE VEDPTNFNLR 240 GLQQKLIHLL PLIMHGND* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10031677 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10031677 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10031677 |