PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031675
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 239aa    MW: 26369.5 Da    PI: 8.4679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031675genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-1076129155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  r+ + +e+ErrRR+++ +  + L +llP+ +   ++kK s ++   +A +YI++L+
  Lus10031675  76 RKLSRKEIERRRRQQMSDLHSSLISLLPQpP--RKGKKSSLSDQMGEAANYINHLK 129
                  577889***********************55..68888****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.1E-1072143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-873133No hitNo description
SuperFamilySSF474594.32E-1274145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.06575128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-776128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-581134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MFSFTYDAPQ QQEDCVVDDL LIWAASSTAA AANDYTHYPP PPPPPVIPQQ PYKAGDETLE  60
TIALGSGRSG GRDEDRKLSR KEIERRRRQQ MSDLHSSLIS LLPQPPRKGK KSSLSDQMGE  120
AANYINHLKD NVQELSNRRD NLLKGTTRAL PSSNKNSSSS ATSSNSGVDS ATNSVTIRQR  180
FDGVEVVISR GRFVLSRVME AVVEEGFDIM SCISTQIGGR FYNTMQCQVH VHNTKLLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031675
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9R9K32e-40B9R9K3_RICCO; DNA binding protein, putative
STRINGLus100316751e-178(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.12e-22bHLH family protein