PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10031675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26369.5 Da PI: 8.4679 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.1 | 2.1e-10 | 76 | 129 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+ + +e+ErrRR+++ + + L +llP+ + ++kK s ++ +A +YI++L+ Lus10031675 76 RKLSRKEIERRRRQQMSDLHSSLISLLPQpP--RKGKKSSLSDQMGEAANYINHLK 129 577889***********************55..68888****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.1E-10 | 72 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.85E-8 | 73 | 133 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-12 | 74 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.065 | 75 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-7 | 76 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.4E-5 | 81 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MFSFTYDAPQ QQEDCVVDDL LIWAASSTAA AANDYTHYPP PPPPPVIPQQ PYKAGDETLE 60 TIALGSGRSG GRDEDRKLSR KEIERRRRQQ MSDLHSSLIS LLPQPPRKGK KSSLSDQMGE 120 AANYINHLKD NVQELSNRRD NLLKGTTRAL PSSNKNSSSS ATSSNSGVDS ATNSVTIRQR 180 FDGVEVVISR GRFVLSRVME AVVEEGFDIM SCISTQIGGR FYNTMQCQVH VHNTKLLR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10031675 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9R9K3 | 2e-40 | B9R9K3_RICCO; DNA binding protein, putative | ||||
STRING | Lus10031675 | 1e-178 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25400.1 | 2e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10031675 |