PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031609
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 292aa    MW: 31641.1 Da    PI: 5.5764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031609genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-151680147
                     TSSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqky 47
                     +g+WTteEd++l  +v+++G+g                    W++Ia++++ gRt++++k++ +++
      Lus10031609 16 KGPWTTEEDDKLTSYVHLHGPGnwrnlpknagtnapsllvvMWSAIAARLP-GRTDNEIKNYRNTH 80
                     79*************************************************.*********97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.461185IPR017930Myb domain
SuperFamilySSF466891.33E-111476IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-191482IPR009057Homeodomain-like
SMARTSM007171.8E-101583IPR001005SANT/Myb domain
PfamPF002491.2E-81648IPR001005SANT/Myb domain
CDDcd001672.41E-101876No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRAPCCEKN NGSLKKGPWT TEEDDKLTSY VHLHGPGNWR NLPKNAGTNA PSLLVVMWSA  60
IAARLPGRTD NEIKNYRNTH IRKKLLSNGI DPVTHAPRLD LLDFSAILGS LSHINPAASL  120
LTLLAAGQTH QPSPPSLNPE LLRLAAAALG SQVPMNVLAD PTTSSQQQEN VCGFQELDNS  180
YDMGNTQRIA SSNLQEDNLV SVPDEFGNWN TVPELSDNCQ SYFQSTTASE NRNGGNVGNV  240
GSSVMSTPLS SPGRFVNGGR WSSNTTTNQE YNHSLFKFEI PESLVSFDDF M*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031609
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447404.11e-58transcription factor MYB102
RefseqXP_009353208.12e-58PREDICTED: protein ODORANT1-like
RefseqXP_024950462.11e-58transcription factor MYB102
SwissprotQ9LDR84e-50MY102_ARATH; Transcription factor MYB102
TrEMBLV4W3V43e-57V4W3V4_9ROSI; Uncharacterized protein
STRINGLus100316090.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-52MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]