PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10031607 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29570 Da PI: 5.0418 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +++++G +W+ ++ g++R++k+c++rw +yl Lus10031607 14 KGTWTAEEDRKLIAYITRYGCWNWRQLPKFAGLKRCGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + eE+e +++++ lG++ W+ Ia ++ gR+++++k++w++ Lus10031607 67 RGNYSLEEEETVIRLHAALGNR-WSVIATHLH-GRSDNEIKNHWHS 110 8999******************.*********.***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 6 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.638 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.33E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.112 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.15E-8 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MVRTPSCDEN GMRKGTWTAE EDRKLIAYIT RYGCWNWRQL PKFAGLKRCG KSCRLRWMNY 60 LRPDLKRGNY SLEEEETVIR LHAALGNRWS VIATHLHGRS DNEIKNHWHS SLKKRATGKS 120 QSPASSSSTQ SSEYSEVKEE GLDKPQMEIP DGVAVLESSN LSIFSPVATL PSPQSDAMSS 180 SSPFSPSLFS FDNVAASSAG CSDVLSYLSS FVGMWETNEA YNNWPEPESE PMVTTDNYWY 240 MPSEVFESLT VEEELQFPLF Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10031607 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021689975.1 | 1e-75 | transcription factor MYB30-like | ||||
TrEMBL | W9RAQ0 | 8e-71 | W9RAQ0_9ROSA; Myb-related protein Myb4 | ||||
STRING | Lus10031607 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 1e-56 | myb domain protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Lus10031607 |