PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031526
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 233aa    MW: 25276.2 Da    PI: 5.8117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031526genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-192877255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa  +++g
  Lus10031526 28 KYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAVISFRG 77
                 8********.**********883....5**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.03E-302883No hitNo description
SMARTSM003805.3E-342891IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-202885IPR016177DNA-binding domain
PfamPF008476.4E-122877IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-292885IPR001471AP2/ERF domain
PROSITE profilePS5103222.6552885IPR001471AP2/ERF domain
PRINTSPR003679.0E-112940IPR001471AP2/ERF domain
PRINTSPR003679.0E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRRPRKPAVV AAAASQKQIG GPQAEEIKYR GVRKRPWGRF AAEIRDPWKK TRVWLGTFDS  60
AEDAARAYDA AVISFRGARA KTNLTSRLLE GPLAVERQAW TTAAEEEEMA MAEVQVVNRS  120
TSCGMSSTVE SSSGHRAAVS INQAHQQQRR RRPLVVVIPP DDCGSDSDLS STIDDEENNG  180
GVTDAGSKSH QQSNESTSAK LLPFDLNFPP PIDENDLVGF SGEELPTLAL CL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-192991669ATERF1
3gcc_A3e-192991669ATERF1
5wx9_A6e-192184771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031526
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973690.13e-45ethylene-responsive transcription factor 3
RefseqXP_016167027.14e-45ethylene-responsive transcription factor 3
RefseqXP_025609027.13e-45ethylene-responsive transcription factor 3
RefseqXP_025666575.14e-45ethylene-responsive transcription factor 3
SwissprotO803391e-29ERF82_ARATH; Ethylene-responsive transcription factor 3
STRINGLus100315261e-171(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.19e-22ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]